View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_4 (Length: 393)
Name: NF4836_high_4
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 12102226 - 12102116
Alignment:
| Q |
15 |
gagagagaacaatctgaagaactgctataaagtgcttcataatgttgttgactcgatggtattatcactgtaccacctcgttatcgtttcaacaacaaaa |
114 |
Q |
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| T |
12102226 |
gagagagagcaatctgaagaactgctataaagtgcttcataatgttgttgactcgatgatattatcactgttccacctcgttatcgtttcaacaacaaaa |
12102127 |
T |
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| Q |
115 |
agagggaactc |
125 |
Q |
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| T |
12102126 |
agagggaactc |
12102116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 570183 - 570082
Alignment:
| Q |
81 |
actgtaccacctcgttatcgtttcaacaacaaaaagagggaactcttcttgagtcatgtctgccttctctgctaatattttgcaaatcctctgctgaagt |
180 |
Q |
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| T |
570183 |
actgttccacctcgttaccgtttcaacaacaacaagagggagctcttcttgggtcatgtatgccttctcggctagtattttgcaactcttctgccgaagt |
570084 |
T |
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| Q |
181 |
tt |
182 |
Q |
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|| |
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| T |
570083 |
tt |
570082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 569925 - 569869
Alignment:
| Q |
195 |
aatgcacacaatagggtgctgtatgcagtttgaaatagtattgtttttcattgcttt |
251 |
Q |
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| T |
569925 |
aatgcaaacaattggatgctatatgcagtttgaattagtattgtttttcattgcttt |
569869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 570267 - 570205
Alignment:
| Q |
19 |
gagaacaatctgaagaactgctataaagtgcttcataatgttgttgactcgatggtattatca |
81 |
Q |
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|||| |||| ||||||||||||||||||||| | | ||| |||||||||||||| |||||||| |
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| T |
570267 |
gagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatca |
570205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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