View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_6 (Length: 343)
Name: NF4836_high_6
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 84 - 341
Target Start/End: Original strand, 26485487 - 26485743
Alignment:
| Q |
84 |
ctgctaatgattgaaagttgaaaattcggccgtggttactttgcaaacctttatattccggaaaaacacggtagattagatgcgggaacacttctaaatg |
183 |
Q |
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| T |
26485487 |
ctgctaatgattgaaagttgaaaattcggccgtggttactttgcaaacctttatattccagaaaaacgcggtagattagatgcgggaacacttctaaatg |
26485586 |
T |
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| Q |
184 |
ttttgttttatgaatgcaggcatgattgaagctagcaatctgaagatggagatgtaaaccagatcttctatcattattttttggatgagctcactccaaa |
283 |
Q |
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| T |
26485587 |
ttttattttatgactgcaggcatgattgaagctagcaatctgaagatggagatgtaaaccagatcttctatcattatttgttggatgagctcactccaaa |
26485686 |
T |
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| Q |
284 |
tgcttcttatcaaaattctttttctcttaaaagtacagaacatattttggttgtatac |
341 |
Q |
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| T |
26485687 |
tgcttcttaccaaaattctttttctctt-aaagtacataacatattttggttgtatac |
26485743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 26485423 - 26485459
Alignment:
| Q |
10 |
ccacagatattgacaagtccttttcatcaaaatgaag |
46 |
Q |
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| T |
26485423 |
ccacagatattgacaagtccttttcatcaaaatgaag |
26485459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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