View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_7 (Length: 342)
Name: NF4836_high_7
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 41380874 - 41380533
Alignment:
| Q |
1 |
attgtaaacataattactaaattttcttagataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggcttaaact |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41380874 |
attgtaaatataattactaaattttcttagataatcataatcttactcatcttttcattctattaaattttcagcttccatgtatcatgtggcttaaact |
41380775 |
T |
|
| Q |
101 |
ctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnnnaataatgtta----t |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
41380774 |
ctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttttaataatgttataatt |
41380675 |
T |
|
| Q |
197 |
aagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380674 |
aagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattat |
41380575 |
T |
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| Q |
297 |
acttgaagccaagacctaccagttttactcttaaactccttg |
338 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
41380574 |
ccttgaagccaagtcctaccagttttactcttaaactccttg |
41380533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 7970444 - 7970105
Alignment:
| Q |
1 |
attgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggcttaaac |
99 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7970444 |
attgtaaatataattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtatcatgtggcttaaac |
7970345 |
T |
|
| Q |
100 |
tctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgca----ttttttctctaag-------nnnnnnnaat |
188 |
Q |
| |
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||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||| | | |
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| T |
7970344 |
tctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtattttttttttctttaagttcttgaataatttatt |
7970245 |
T |
|
| Q |
189 |
aatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgagg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
7970244 |
aatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagcattgagg |
7970145 |
T |
|
| Q |
289 |
agtattatacttgaagccaagacctaccagttttactctt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7970144 |
agtattatacttgaagccaagacctaccagttttactctt |
7970105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8043264 - 8043604
Alignment:
| Q |
1 |
attgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggcttaaac |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
8043264 |
attgtaaatgtaattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtattgtgtggcttaaac |
8043363 |
T |
|
| Q |
100 |
tctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttt----ttctctaag-------nnnnnnnaat |
188 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| | | |
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| T |
8043364 |
tctacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttttcttctttaagttcttgaataatttatt |
8043463 |
T |
|
| Q |
189 |
aatg-ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgag |
287 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
8043464 |
aatgtttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgag |
8043563 |
T |
|
| Q |
288 |
gagtattatacttgaagccaagacctaccagttttactctt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
8043564 |
gagtattatacttgaagccaagacctaccagttttactctt |
8043604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8033328 - 8033668
Alignment:
| Q |
1 |
attgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggcttaaac |
99 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| || |||||||| || |||||||||||||| || || |||| ||||||||||||||||||||||| | | |
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| T |
8033328 |
attgtaaatataatcactggattttcttaggattatcataattttgctcatcttttcattatattacattt-cagcttccatgtatcatgtggctaatcc |
8033426 |
T |
|
| Q |
100 |
tctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta----------agnnnnnnnaata |
189 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||| | ||| |
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| T |
8033427 |
tttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctctatcaactttataatataatttata |
8033526 |
T |
|
| Q |
190 |
atgttataagcacatgtttaa--tatttgctcca-tatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattga |
286 |
Q |
| |
|
||||||| |||||||||||| | ||||||| | | | ||||||||| |||||||| |||| | ||||||||||| | ||||||||||||||||||| |
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|
| T |
8033527 |
ttgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattga |
8033626 |
T |
|
| Q |
287 |
ggagtattatacttgaagccaagacctaccagttttactctt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8033627 |
ggagtattatacttgaagccaagacctaccagttttactctt |
8033668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 7976993 - 7976908
Alignment:
| Q |
66 |
aattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| |||| | |||| ||||||| |||||| |||||||||| |||| |
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|
| T |
7976993 |
aattttcagcttccatgtatcatgtggctttcaatctacaaaccaagaaaattcggcttgtcatggtgggctaattgggtatgtat |
7976908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 14197211 - 14197141
Alignment:
| Q |
64 |
taaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtgg |
134 |
Q |
| |
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||||||||||||| ||||| || ||||||||| | ||||||| |||| |||||||||||||||||||||| |
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|
| T |
14197211 |
taaattttcagctaccatgcataatgtggcttgcaatctacaaaccaaggagattcagcttgtcttggtgg |
14197141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 34410575 - 34410630
Alignment:
| Q |
76 |
ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg |
131 |
Q |
| |
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||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| |
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|
| T |
34410575 |
ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg |
34410630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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