View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_9 (Length: 324)
Name: NF4836_high_9
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 11054674 - 11054359
Alignment:
| Q |
1 |
atatagaccaacactccacttccgtaacagcagggatgcgacattgtgaggcagcagcttgttatgcgtaggtgagattgcaacgaccacaacgaggtag |
100 |
Q |
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| T |
11054674 |
atatagaccagcactccacttccgtaacagcagggatgcgacattgtgaggcggcagtttgttatgcgtaggtgagattgcaacgaccacaacgaggtag |
11054575 |
T |
|
| Q |
101 |
acttagatacgacgtagacgatttgttctccaaccaggaaaatagaacaggtaatgggacatgtttgcaaggtgaagaaggagagtattcatgctcggca |
200 |
Q |
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| T |
11054574 |
atttaaatacaacgtagacgatttgttctccaaccaggaaaatagaacaagtaatgggatgtgtttgcaaggtgaggaag--gagtattcatgctcgtca |
11054477 |
T |
|
| Q |
201 |
agactgattttctttgttgtaccttgttgacgtggatgaagcacttgggttgtatcatgcaattcagcgggtcatcgatatgtactttgacaacttttac |
300 |
Q |
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||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
11054476 |
agactgattttctctgttgtaccttgttgacgtggacgatgcacttgggttgtatcatgcaattcagcgggtcatcgatatgtactt--acagcttttac |
11054379 |
T |
|
| Q |
301 |
ttcgagcttaactccaaact |
320 |
Q |
| |
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||||||||| |||| ||||| |
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| T |
11054378 |
ttcgagcttgactcaaaact |
11054359 |
T |
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