View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4836_low_1 (Length: 416)

Name: NF4836_low_1
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4836_low_1
NF4836_low_1
[»] chr3 (12 HSPs)
chr3 (1-240)||(43533211-43533451)
chr3 (240-408)||(43532981-43533149)
chr3 (1-240)||(43528929-43529185)
chr3 (244-366)||(43528739-43528863)
chr3 (75-192)||(43537658-43537777)
chr3 (84-187)||(43523220-43523325)
chr3 (244-313)||(43537478-43537549)
chr3 (365-404)||(43528666-43528705)
chr3 (14-75)||(43537796-43537855)
chr3 (365-401)||(43537355-43537391)
chr3 (368-402)||(43522905-43522939)
chr3 (244-303)||(43523046-43523107)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-55)||(18842-18886)
[»] chr5 (1 HSPs)
chr5 (11-55)||(22068431-22068475)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43533451 - 43533211
Alignment:
Q  1 ttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533451 ttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcatac 43533352  T
Q  101 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||         
T  43533351 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaa 43533252  T
Q  201 nnncaatcacactcatgcatatacataaatt-atttgacag 240  Q
       |||||||||||||||||||||||||||| |||||||||    
T  43533251 aaacaatcacactcatgcatatacataaattaatttgacag 43533211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 240 - 408
Target Start/End: Complemental strand, 43533149 - 43532981
Alignment:
Q  240 gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa 339  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533149 gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa 43533050  T
Q  340 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533049 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat 43532981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43529185 - 43528929
Alignment:
Q  1 ttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacat-------------------catgca 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||                   ||||||    
T  43529185 ttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacaagcataattttgagatacagatgtcatgca 43529086  T
Q  82 atatcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgag- 178  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||| ||||||| |||||||||||||  ||||||||||||     
T  43529085 atatcatgaaagttcataccctgtggacgatgtatccagctctttctttgacaaagtaattgtaatcatcgaaacatgacgagtagtctccaaactgagc 43528986  T
Q  179 -caagtaaaacacaacggnnnnnnnncaatcacactcatgcatatacataaattatttgacag 240  Q
     ||||||||||||||||          ||||| ||||||||||||||||||||||||||||||    
T  43528985 acaagtaaaacacaacg------aaaaaatcatactcatgcatatacataaattatttgacag 43528929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
Q  244 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat 341  Q
    |||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  43528863 gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat 43528764  T
Q  342 gctaaccaattttctgcatagagat 366  Q
    || ||||||||||||||||||||||    
T  43528763 gccaaccaattttctgcatagagat 43528739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 43537777 - 43537658
Alignment:
Q  75 tcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaa 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |  |||||||||||||| | |||||||||||||  ||||||    
T  43537777 tcatgcaatatcatgaaagtccataccctgtggaggatgtatccagctctttctttgacagcgtaattgtgatcattgaaacatgacgagtagtctccaa 43537678  T
Q  173 actgagcaagtaaaacacaa 192  Q
    ||||||||||||||||||||    
T  43537677 actgagcaagtaaaacacaa 43537658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 43523325 - 43523220
Alignment:
Q  84 atcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |||||||||||||   ||||||||| ||||    
T  43523325 atcatgaaagttcataccctgtggaggatgtatccagctctttctttgacaaagtaattgtgatcattgaaacatgacgagtagtttccaaactgcgcaa 43523226  T
Q  182 gtaaaa 187  Q
    ||||||    
T  43523225 gtaaaa 43523220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
Q  244 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag 313  Q
    |||||||||||||||||||  |||||||||||||| | |  |||||||||||||||||||||||||| ||||    
T  43537549 gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag 43537478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 43528705 - 43528666
Alignment:
Q  365 attacagtcttatttattgcacgtcccattgctttgagaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43528705 attacagtcttatttattgcacgtcccattgctttgagaa 43528666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 43537855 - 43537796
Alignment:
Q  14 aagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacat 75  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||| ||||    
T  43537855 aagtagtttgcttgaaaaa--actaagcctatcaagagataaggcatctgattaacaaacat 43537796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 43537391 - 43537355
Alignment:
Q  365 attacagtcttatttattgcacgtcccattgctttga 401  Q
    |||||||||||||||||||||||||||||||||||||    
T  43537391 attacagtcttatttattgcacgtcccattgctttga 43537355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
Q  368 acagtcttatttattgcacgtcccattgctttgag 402  Q
    |||||||||||||| ||||||||||||||||||||    
T  43522939 acagtcttatttatcgcacgtcccattgctttgag 43522905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
Q  244 gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa 303  Q
    ||||||||||||||||||| |  ||||||||||||   || |||||||||||||||||||||    
T  43523107 gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa 43523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18842 - 18886
Alignment:
Q  11 atcaagtagtttgcttgaaaaataactaagcctattaagagataa 55  Q
    ||||| |||||||| | ||||||||||||||||||||| ||||||    
T  18842 atcaactagtttgcattaaaaataactaagcctattaaaagataa 18886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 22068431 - 22068475
Alignment:
Q  11 atcaagtagtttgcttgaaaaataactaagcctattaagagataa 55  Q
    ||||| |||||||| | ||||||||||||||||||||| ||||||    
T  22068431 atcaactagtttgcattaaaaataactaagcctattaaaagataa 22068475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University