View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-1 (Length: 974)
Name: NF4837-Insertion-1
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 7 - 599
Target Start/End: Complemental strand, 15585980 - 15585388
Alignment:
| Q |
7 |
aaaactcaacaatgtggcatttcaaaactagaaataaggcactgacctcagcctttgcatcagtaacctcatggagctcatagggcactagtgaattgga |
106 |
Q |
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| T |
15585980 |
aaaactcaacaatgtggcatttcaaaactagaaataaggcactgacctcagcctttgcatcagtaacctcatggagctcatagggcactagtgaattgga |
15585881 |
T |
|
| Q |
107 |
cctctgctggatggtcttgacagcatgatttgctgcatcctgaacttgaggatcatgtgctggaacagactgccaccctggcttgtggccatctaataac |
206 |
Q |
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| T |
15585880 |
cctctgctggatggtcttaatagcatgatttgctgcatcctgaacttgaggatcatgtgctggaacagactgccaccctggcttgtggccatctaataac |
15585781 |
T |
|
| Q |
207 |
aaaaacagaacagcagaagatggtattagcaaacacctgaagttcaaatgttcaacaagaaatacaagacaaattaagcaatcataacctatgtccagga |
306 |
Q |
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| T |
15585780 |
aaaaacagaacagcagaagatggtattagcaaacacctgaagttcaaatgttcaacaagaaatacaagacaaattaagcaatcataacctatgtccagga |
15585681 |
T |
|
| Q |
307 |
actcaatgcatcacttatcagttaataactatgattataatggttagattgtcttttttacttataaaataacaggaaccataaggtaaattccagataa |
406 |
Q |
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| T |
15585680 |
actcaatgcatcacttatcagttaataactatgattataatggttagattgtcttttttacttataaaataacaggaaccatacggtaaattccagataa |
15585581 |
T |
|
| Q |
407 |
aatttaggcctcactcctacaagcctttttctacattttcaatggaaatggcgcatggataaataccaatgctcgcatcctgatgttgcactaaatatga |
506 |
Q |
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| T |
15585580 |
aatttaggcctcactcctacaagcctttttctacatttccaatggaaatggcgcatggataaataccaatgctcgcatcctgatgttgcactaaatatga |
15585481 |
T |
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| Q |
507 |
tatcataaattcactaccctgcttatctccaagttcactttaaagcaggatttatgatgatgcgcagcaattttggcaatttgtaggccttct |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
15585480 |
tatcataaattcactaccctgcttatctccaagttcactttaaagcaggatttatgatgatgcgcagcaattttggcaatatgcaggccttct |
15585388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 771 - 974
Target Start/End: Complemental strand, 15585140 - 15584941
Alignment:
| Q |
771 |
ttgacaattagaaaggggacaaagggagtacttgactacaaccccttcaaacacctctattaatggctagcctgttaatcatatcaagaaataagtggtc |
870 |
Q |
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| T |
15585140 |
ttgacaattagaaaggg-acaaagggagtacttgactaca-ccccttcaaacacccctattaatggctagcatgttaatcatatcaagaaataagtggtt |
15585043 |
T |
|
| Q |
871 |
tacacaaaacgacataccctttatcacaccaagatctgaagtggtaaatgatggtgcatgacccttcaccagcatgcttgaactctgtaaggttctttaa |
970 |
Q |
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| T |
15585042 |
tacacaaaatggcataccctttatcacaccaagatctgaagtggtaaatgatggtgcatga-ccatcaccagcatgcttgaactctgtaa-gttctttaa |
15584945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 614 - 717
Target Start/End: Complemental strand, 15585306 - 15585194
Alignment:
| Q |
614 |
atattacctttcattggtccagtcactaatttactatctcttttcattaatttaattg-----------ataaagtaagagtataattaaacaatataaa |
702 |
Q |
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| T |
15585306 |
atattacctttcattggtccagtcactaattta--atctcttttcattaatttaattgtaaaataattgataaagtaagagtataattaaacaataaaaa |
15585209 |
T |
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| Q |
703 |
tagtaatataacctt |
717 |
Q |
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| T |
15585208 |
tagtaatataacctt |
15585194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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