View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-10 (Length: 606)
Name: NF4837-Insertion-10
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Original strand, 36025150 - 36025702
Alignment:
| Q |
7 |
aaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatgctaccaagtcgtgactaaggaaaatgagacaagcct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36025150 |
aaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatcataccaagtcgtgactaaggaaaatgagacaagcct |
36025249 |
T |
|
| Q |
107 |
acacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaatcaccacatggatagtaacaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36025250 |
acacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaagcaccacatggatagtaacaaa |
36025349 |
T |
|
| Q |
207 |
tccaccaccaatattttgacagaaggttttcctagcctagaattg-----------------tttttggtggggattatctacctatgtattgtctactt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
36025350 |
tccaccaccaatattttgacagaaggttttcctagcctagaattgctttcatctttgttgttttgttggtggggattatctacctatgtattgtctactt |
36025449 |
T |
|
| Q |
290 |
cttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaaccatcaatttatcgacaagtttctcaggtttacttccctatc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025450 |
cttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaatcatcaatttatcgacaagtttctcaggtttacttccctatc |
36025549 |
T |
|
| Q |
390 |
cttccgagtcttcgatcttaggcttctcaagctgcgttacagatgcacatgtcatcnnnnnnngccaagcttcatgtcattgcccgaaggttgcgctaaa |
489 |
Q |
| |
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||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||| | |||||||||||| |
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| T |
36025550 |
tttccgggtcttcgatcttcggcttctcaagttgcgttacaggtgcacatgtcatctttttttgccaagcttcatgtcattccccaagggttgcgctaaa |
36025649 |
T |
|
| Q |
490 |
gagttgaacttccaagttattatttgctacacagatttgctttagtgtgttca |
542 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36025650 |
gagttgaacttccaagttattatttgctgcatagatttgctttagtgtgttca |
36025702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 46116234 - 46116198
Alignment:
| Q |
329 |
tctaaataatttattttaaccatcaatttatcgacaa |
365 |
Q |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
46116234 |
tctaaataatttattttaaccatcaatctatctacaa |
46116198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 46129368 - 46129332
Alignment:
| Q |
329 |
tctaaataatttattttaaccatcaatttatcgacaa |
365 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
46129368 |
tctaaataatttattttaaccatcaatctatctacaa |
46129332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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