View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-11 (Length: 590)
Name: NF4837-Insertion-11
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 306 - 574
Target Start/End: Complemental strand, 45512530 - 45512262
Alignment:
| Q |
306 |
attcatgagatcaagcttggtaacatgtccagtaacattgtcacaaccaatgccttcccattgacaacattgagtgcctttccatgatgaaagcttgttt |
405 |
Q |
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| T |
45512530 |
attcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgttt |
45512431 |
T |
|
| Q |
406 |
ggtgaatcttttgcaatggatgctttgaaatcgagaagggcttgcctctctttttcaacgcaggggatgtttgaatttacacacaagcatatttgtgcaa |
505 |
Q |
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| T |
45512430 |
ggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaa |
45512331 |
T |
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| Q |
506 |
tttcaatcaacaccaaaagcactacacgtttgtaatatcttcccatgctttctctctgtgtttctattg |
574 |
Q |
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| T |
45512330 |
tttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattg |
45512262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 45512896 - 45512625
Alignment:
| Q |
7 |
actggtgtcgtcatccatttgtaatcttctctctacaaaatctgtagagaaatagtaatcggagctgagatcaagaaactgtaggttcttgagatttccg |
106 |
Q |
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| T |
45512896 |
actggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttcttgagatttctg |
45512797 |
T |
|
| Q |
107 |
agactgttgggaatcttcccgctaaaacgagcatannnnnnnnnnnnntgctcaaggcttcccatggaaccgatgaacatgggaattggactctcacgga |
206 |
Q |
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| T |
45512796 |
agactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactga |
45512697 |
T |
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| Q |
207 |
aatcacttccagacaagtccaaat-agtcaagtgttccaattgcaacaaagatgaactgacatttggagcaa |
277 |
Q |
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||| | |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
45512696 |
aattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacatttggagcaa |
45512625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 22848813 - 22848917
Alignment:
| Q |
157 |
ctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttccaattgcaacaaa |
255 |
Q |
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|||||| | |||||||||||| | |||||| |||||||||||| | ||||||| |||||| ||||||||||| |||||||| |||||| ||||||||| |
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| T |
22848813 |
ctcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagtattccaagtgcaacaaa |
22848912 |
T |
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| Q |
256 |
gatga |
260 |
Q |
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||||| |
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| T |
22848913 |
gatga |
22848917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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