View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-12 (Length: 575)
Name: NF4837-Insertion-12
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 189 - 575
Target Start/End: Complemental strand, 5062278 - 5061892
Alignment:
| Q |
189 |
gggaagtaaaagacaatagttgcagccacacgatgtgtgaattcaatatttcaattattttattttgcttacaaatagttttatttcgagcaagcctctt |
288 |
Q |
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| T |
5062278 |
gggaagtaaaagacaatagttgcagccacacgatgtgtgaattcaatatttcaattattttattttacttacaaatagttttatttcgagcaagcctctt |
5062179 |
T |
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| Q |
289 |
ttcaataaatcaaaaactggttgttaatatgtttaatnnnnnnnngacatattcttgtttgagtaaaagaaagacattcttaaaaatatgtttactaaaa |
388 |
Q |
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| T |
5062178 |
ttcaataaattaaaaactagttgttaatatttttaataaaaaaaagacatattcttgtttgagtaaaagaaagacattcttaaaaatatgtttactaaaa |
5062079 |
T |
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| Q |
389 |
aaggttgattatattttgaaatgatcaaagttaattaagttaataattattagcactatgttagagtggtcatcaacctcttttagtttaaaaaatatat |
488 |
Q |
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| T |
5062078 |
aaggttgattatattttgaaatgatcaaagttaattaagttaataattattagcactatgttagagtggtcatcaacctcttttagtttaaaaaatatat |
5061979 |
T |
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| Q |
489 |
attttacagttgtcattgaaaactcgtatacaccaatggaaaactataattgtttgatatcaatttctttaattaccatgcttatta |
575 |
Q |
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| T |
5061978 |
attttacaattgtcattgaaaacttgcatacaccaatggaaaactataattgttggatatcaatttctttaattaccatgcttatta |
5061892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 5062455 - 5062367
Alignment:
| Q |
8 |
atgtctgttagtagtaagtcatgatactctcatgctcacctacacaagacacgtgaaaaataacaagaactgaatattctctttttatt |
96 |
Q |
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| T |
5062455 |
atgtctgttagtagtaagtcatgatactctcatgctcacctacacaagacacgtgaaaaataacaagaactgaatattctctttttatt |
5062367 |
T |
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