View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-13 (Length: 545)
Name: NF4837-Insertion-13
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 190 - 494
Target Start/End: Complemental strand, 28763677 - 28763372
Alignment:
| Q |
190 |
ttgagaacatcaacaaactatagaagtttggagaatcaaagccgaaaatagtaaaagtctaa-gtgtgtgttggtccgtaacatgttaatgttgaatcta |
288 |
Q |
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| T |
28763677 |
ttgagaacatcaacaaactatacaagtttggagaatcaaagccgaaaatagtaaaagtctaaagtgtgtgttggtccgtaacatgttaatgttgaatcta |
28763578 |
T |
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| Q |
289 |
gttcaacaaaagtatctgttaggaacgtgacttatcactaaaatgacaattacttagcttactcattttattggtagcaattctcacaagagatattcaa |
388 |
Q |
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| T |
28763577 |
gttcaacaaaagtatctgttaggaacgtgacttatcactaaaatgacaattacttagcttactcattttattggtagcaattctcacaagagatattcaa |
28763478 |
T |
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| Q |
389 |
ttttgtataaaccttcaatttggtctttaaattaccacccttttatttggtccctgagctatcaaaatataataaatagtttccgaaccattaaaaatca |
488 |
Q |
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| T |
28763477 |
ttttgtataaaccttcaatttggtctttaaattaccacccttttatttggtccctgagctatcaaaatataataaatagtttccgaactattaaaaatca |
28763378 |
T |
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| Q |
489 |
atccag |
494 |
Q |
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|||||| |
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| T |
28763377 |
atccag |
28763372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 28763792 - 28763700
Alignment:
| Q |
63 |
gggtcagtccacaacaaagtcaatcacgcaaattcgcaatgacaaatttgaaaatgaaagtgaaaataaaggtcaacgcttaagcaaaacatctgattgc |
162 |
Q |
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| T |
28763792 |
gggtcagtccacaacagagtcaatcacgcaa--------tgacaaatttgaaaatgaaa------attaaggtcaacgcttaagcaaaacatctgattgc |
28763707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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