View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4837-Insertion-15 (Length: 121)

Name: NF4837-Insertion-15
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4837-Insertion-15
NF4837-Insertion-15
[»] chr5 (2 HSPs)
chr5 (8-120)||(30654715-30654827)
chr5 (13-67)||(14417145-14417199)
[»] chr8 (2 HSPs)
chr8 (28-77)||(8834286-8834335)
chr8 (20-73)||(29386954-29387007)
[»] scaffold0209 (2 HSPs)
scaffold0209 (41-92)||(7432-7483)
scaffold0209 (41-92)||(20886-20937)
[»] chr1 (1 HSPs)
chr1 (18-103)||(33153343-33153428)
[»] chr7 (1 HSPs)
chr7 (13-64)||(25035539-25035590)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 30654827 - 30654715
Alignment:
Q  8 ccaagccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattcccagcagcgtgtatatactgaacaggtgactttgtaat 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||    
T  30654827 ccaagccctctagaaaagctcatctcccctgagcttgcagcaaccataagtgcaaactattcccagcagcgtgtatatattgaacaggtcactttggaat 30654728  T
Q  108 gcattctacaagc 120  Q
    |||||||||||||    
T  30654727 gcattctacaagc 30654715  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 14417145 - 14417199
Alignment:
Q  13 ccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactat 67  Q
    |||||||||| |||||||||||||| | |||||||||||||||||||||| ||||    
T  14417145 ccctctagaagagctcatctcccctgaacttgcagcaaccataagtgcaagctat 14417199  T

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Target: chr8 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 8834286 - 8834335
Alignment:
Q  28 catctccccttagcttgcagcaaccataagtgcaaactattcccagcagc 77  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  8834286 catctcccctaaacttgcagcaaccataagtgcaaactatgcccagcagc 8834335  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 29386954 - 29387007
Alignment:
Q  20 gaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattcccag 73  Q
    |||||||||||||||| | | ||||||||||||||||||||||||||| |||||    
T  29386954 gaaaagctcatctcccttaaacttgcagcaaccataagtgcaaactatgcccag 29387007  T

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Target: scaffold0209 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 7483 - 7432
Alignment:
Q  41 cttgcagcaaccataagtgcaaactattcccagcagcgtgtatatactgaac 92  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  7483 cttgcagcaaccataagtgcaaactatgcccagcagcacgtatagactgaac 7432  T

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Target: scaffold0209; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 20937 - 20886
Alignment:
Q  41 cttgcagcaaccataagtgcaaactattcccagcagcgtgtatatactgaac 92  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  20937 cttgcagcaaccataagtgcaaactatgcccagcagcacgtatagactgaac 20886  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 33153428 - 33153343
Alignment:
Q  18 tagaaaagctcatctccccttagcttgcagcaaccataagtgcaaactattcccagcagcgtgtatatactgaacaggtgactttg 103  Q
    ||||| |||||||||||||| | |||| |||||||||||| |||||||||  ||| || ||  |||||||||||| ||||| ||||    
T  33153428 tagaagagctcatctcccctgaacttgaagcaaccataagcgcaaactataaccaacaacgcatatatactgaacgggtgattttg 33153343  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 25035539 - 25035590
Alignment:
Q  13 ccctctagaaaagctcatctccccttagcttgcagcaaccataagtgcaaac 64  Q
    |||||||||| ||||||||| || | | ||||||||||||| ||||||||||    
T  25035539 ccctctagaagagctcatcttccttgaacttgcagcaaccacaagtgcaaac 25035590  T

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