View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-18 (Length: 369)
Name: NF4837-Insertion-18
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-18 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 2461319 - 2461681
Alignment:
| Q |
7 |
agcaatttcatcaatggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaaga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461319 |
agcaatttcatcaatggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaaga |
2461418 |
T |
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| Q |
107 |
ttagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2461419 |
ttagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcttcatgctcagttggaatttttgttgatcgtg |
2461518 |
T |
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| Q |
207 |
ggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461519 |
ggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgctgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgg |
2461618 |
T |
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| Q |
307 |
agcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaa |
369 |
Q |
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| T |
2461619 |
agcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaa |
2461681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 2450303 - 2450665
Alignment:
| Q |
7 |
agcaatttcatcaatggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaaga |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450303 |
agcaatttcatcgatggcgaacattcatgaagacatctgtacaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaaga |
2450402 |
T |
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| Q |
107 |
ttagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtg |
206 |
Q |
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||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
2450403 |
gtagacggttcactagacattataagaaacgattttcgtttggttaacaaaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtg |
2450502 |
T |
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| Q |
207 |
ggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgg |
306 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
2450503 |
ggcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttatgg |
2450602 |
T |
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| Q |
307 |
agcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaa |
369 |
Q |
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| T |
2450603 |
agctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaa |
2450665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 2445542 - 2445899
Alignment:
| Q |
7 |
agcaatttcatcaatggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaaga |
106 |
Q |
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|||||| || |||||||| |||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
2445542 |
agcaatctcctcaatggctaacattcacgaagacatatgtgctaccgctgaaagaaagagagccgcagtcatcattctcccattccatatgcaacaaaga |
2445641 |
T |
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| Q |
107 |
ttagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtg |
206 |
Q |
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||||| |||||||||| | ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2445642 |
ttagatggttcactagacgttacaagaaatgattttcgatttgttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgcg |
2445741 |
T |
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| Q |
207 |
ggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgg |
306 |
Q |
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| T |
2445742 |
gacttggtggtacatgtcatgtgtctgcaagtaatgtttcttattgtgtggctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttacgg |
2445841 |
T |
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| Q |
307 |
agcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaa |
364 |
Q |
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||| |||| |||||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2445842 |
agctcgtacggccgagcaccctggcataagattagtgattattcgcttcttagtggaa |
2445899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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