View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4837-Insertion-19 (Length: 316)

Name: NF4837-Insertion-19
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4837-Insertion-19
NF4837-Insertion-19
[»] chr4 (2 HSPs)
chr4 (13-316)||(55641488-55641790)
chr4 (8-316)||(42661849-42662156)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 55641790 - 55641488
Alignment:
Q  13 tatgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgt 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55641790 tatgtccatattctgttagctggtgtgtccatacatttcattacatactcttat-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgt 55641692  T
Q  113 gtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacact 212  Q
    ||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55641691 gtaatgttacataatcaagcttacaaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattcatgcacact 55641592  T
Q  213 aattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaattgct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55641591 aattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaattgct 55641492  T
Q  313 atag 316  Q
    ||||    
T  55641491 atag 55641488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 42662156 - 42661849
Alignment:
Q  8 ctatctatgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgc 107  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  42662156 ctatctctgtccatattctgttagctggtgggtccatacatttcattacatactcttgt-aatcacaaagcttttcccccttcccatacgtttagtgcgc 42662058  T
Q  108 aacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgc 207  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42662057 aacgtgtaatgttacataatcaagcttataaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgc 42661958  T
Q  208 acactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaa 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661957 acactcattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaa 42661858  T
Q  308 ttgctatag 316  Q
    || ||||||    
T  42661857 ttactatag 42661849  T

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