View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4837-Insertion-2 (Length: 801)

Name: NF4837-Insertion-2
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4837-Insertion-2
NF4837-Insertion-2
[»] scaffold0256 (2 HSPs)
scaffold0256 (382-572)||(10720-10910)
scaffold0256 (578-744)||(11044-11209)
[»] scaffold0133 (2 HSPs)
scaffold0133 (105-188)||(14418-14501)
scaffold0133 (212-248)||(14505-14541)
[»] chr7 (2 HSPs)
chr7 (577-743)||(48298634-48298799)
chr7 (501-569)||(48298428-48298496)
[»] chr2 (4 HSPs)
chr2 (577-743)||(233518-233683)
chr2 (577-744)||(21629269-21629432)
chr2 (501-569)||(233312-233380)
chr2 (506-569)||(21629570-21629632)
[»] chr1 (2 HSPs)
chr1 (577-743)||(7391812-7391977)
chr1 (501-569)||(7392115-7392183)
[»] chr6 (11 HSPs)
chr6 (580-742)||(16977340-16977502)
chr6 (611-744)||(16874371-16874504)
chr6 (663-744)||(16580511-16580592)
chr6 (663-744)||(16614788-16614869)
chr6 (506-569)||(16572802-16572865)
chr6 (663-715)||(16572520-16572573)
chr6 (506-569)||(16580823-16580886)
chr6 (506-569)||(16614494-16614557)
chr6 (506-569)||(16874684-16874747)
chr6 (224-298)||(16991724-16991798)
chr6 (385-482)||(16572926-16573027)


Alignment Details
Target: scaffold0256 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 382 - 572
Target Start/End: Original strand, 10720 - 10910
Alignment:
Q  382 tgatgatagtgagtatgtgaagtaaatgcaaagtaaagcacaaactcccgtaagcctctgagaataggagatgtcttgacctctgcaacctgaaggagcg 481  Q
    |||||||||||||||||||||| |||||||| || ||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  10720 tgatgatagtgagtatgtgaagcaaatgcaatgttaagcacaaaatcccgtaagcgtctgagaataggacatgtcttgacctctgccacctgaaggagcg 10819  T
Q  482 gtggtgagatccaaccgattctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattttgg 572  Q
    | ||| |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10820 gcggtaagatccaaccgactctgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttgg 10910  T

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Target: scaffold0256; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 578 - 744
Target Start/End: Original strand, 11044 - 11209
Alignment:
Q  578 tatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttc 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| |||||||||    
T  11044 tatgatgaagaggaggtaaataagtatgtcctaagtgccacctcttt-gattttgtccttcagcatttcgagcacggagtcgtggttttttacaaatttc 11142  T
Q  678 catacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtga 744  Q
    ||||   ||||||||||||||| | ||||||| |||| ||||||||||||||||||||| ||||||||    
T  11143 catatgccaagagatgcaatatagtcaaaagcattgt-ggaagtctccattgataagaagccttgtga 11209  T

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Target: scaffold0133 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 14418 - 14501
Alignment:
Q  105 gcaatactcgactagaaataaatatgattaaataaccaataccaatcagaagttggagcatctatacgaagattgcaaaaactg 188  Q
    ||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  14418 gcaatactcaactaaaaatacatatgataaaataaccaataccaatcagaagttggtgcatctaaacgaagattgcaaaaactg 14501  T

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Target: scaffold0133; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 14505 - 14541
Alignment:
Q  212 agaagttggtgcgatagaaacaatatttgtctagttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  14505 agaagttggtgcgatagaaacaatatttgtctagttt 14541  T

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Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 743
Target Start/End: Original strand, 48298634 - 48298799
Alignment:
Q  577 atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaattt 676  Q
    ||||||||||||| ||||||||| |||||||||||| ||| |||| ||| |||||||||||||||||||  ||| ||| |||  | ||||||||||||||    
T  48298634 atatgatgaagagaaggtaaataggtatgtcctaagcgcctcctccttg-attttgtccttcagcatttctagcacggtgtcacgatttttcacaaattt 48298732  T
Q  677 ccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtg 743  Q
    ||| || ||||||||||||||| || |||| ||||| | |||| || ||||| ||||||| |||||||    
T  48298733 ccacacctcaagagatgcaataatgtcaaaggccttct-ggaaatcgccattaataagaacccttgtg 48298799  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 48298428 - 48298496
Alignment:
Q  501 tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  48298428 tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacattt 48298496  T

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Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 743
Target Start/End: Original strand, 233518 - 233683
Alignment:
Q  577 atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaattt 676  Q
    ||||||||||||| | ||||||| |||||||||||| ||| |||| ||| |||||||||||||||||||  ||| ||| |||  | ||||||||||||||    
T  233518 atatgatgaagagaaagtaaataggtatgtcctaagcgcctcctccttg-attttgtccttcagcatttctagcacggtgtcacgatttttcacaaattt 233616  T
Q  677 ccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtg 743  Q
    ||| || ||||||||||||||| || |||| ||||| | |||| |||||||| ||||||| |||||||    
T  233617 ccaaacctcaagagatgcaataatgtcaaaggccttct-ggaaatctccattaataagaacccttgtg 233683  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 577 - 744
Target Start/End: Complemental strand, 21629432 - 21629269
Alignment:
Q  577 atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaattt 676  Q
    ||||||||||||| |||||| || |||||||||||||||| |||| ||| |||||||||||||   |||  ||| |||||||   || ||||||||||||    
T  21629432 atatgatgaagagaaggtaattaggtatgtcctaagtgcctcctccttg-attttgtccttca---tttctagcacggagtctcagtgtttcacaaattt 21629337  T
Q  677 ccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtga 744  Q
    ||||||||| ||||||||||||||| |||| ||||||  ||||||||||||| |||||||  |||||||    
T  21629336 ccatacatcgagagatgcaatattgtcaaaggccttg-aggaagtctccattaataagaagtcttgtga 21629269  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 233312 - 233380
Alignment:
Q  501 tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  233312 tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacattt 233380  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 21629632 - 21629570
Alignment:
Q  506 aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    ||||||||||| ||| | |||||||| ||||||||| |||||||||||||||||||||||||||    
T  21629632 aaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacattt 21629570  T

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Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 743
Target Start/End: Complemental strand, 7391977 - 7391812
Alignment:
Q  577 atatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaattt 676  Q
    ||||||||||||| ||||||||| |||||||||||||||| | || ||| ||||||||||| |||||||  ||| ||| |||  | ||||||||||||||    
T  7391977 atatgatgaagagaaggtaaataggtatgtcctaagtgcctcttccttg-attttgtccttaagcatttctagcacggcgtctcgatttttcacaaattt 7391879  T
Q  677 ccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtg 743  Q
    ||| || ||||||||||||||| || |||| ||||| | |||| |||||||| ||||||| |||||||    
T  7391878 ccagacgtcaagagatgcaataatgtcaaaggccttct-ggaaatctccattaataagaacccttgtg 7391812  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 7392183 - 7392115
Alignment:
Q  501 tctgaaaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7392183 tctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacattt 7392115  T

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Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 580 - 742
Target Start/End: Original strand, 16977340 - 16977502
Alignment:
Q  580 tgatgaagaggaggtaaataagtatgtcctaagtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttcca 679  Q
    |||||||| ||||||||||| |||||||||||||| | |||| |||  ||||  |||||||||| |  | |  ||||||  | |||||||||||||||||    
T  16977340 tgatgaaggggaggtaaataggtatgtcctaagtgtctcctccttgattttttcccttcagcatctctaacagggagtctcgttttttcacaaatttcca 16977439  T
Q  680 tacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgt 742  Q
    ||| |||||||||||||||||| |||||||||||| | ||||| ||||| ||||||| ||||||    
T  16977440 tacgtcaagagatgcaatattgtcaaaagccttgt-gcaagtccccattcataagaagccttgt 16977502  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 611 - 744
Target Start/End: Complemental strand, 16874504 - 16874371
Alignment:
Q  611 agtgccacctctttggattttgtccttcagcattttgagcgcggagtcctggtttttcacaaatttccatacatc-aagagatgcaatattg-caaaagc 708  Q
    |||||| |||| |||| |||||||||||| |||||  ||| ||| ||| || ||||||||||||||||||||||| ||||||||||||| || || ||||    
T  16874504 agtgcctcctccttgg-ttttgtccttcaacatttccagcacggcgtcttgatttttcacaaatttccatacatcaaagagatgcaataatgtcacaagc 16874406  T
Q  709 cttgtgggaagtctccattgataagaaaccttgtga 744  Q
    ||||| ||||||||||||||||||||| | ||||||    
T  16874405 cttgt-ggaagtctccattgataagaagcattgtga 16874371  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 663 - 744
Target Start/End: Complemental strand, 16580592 - 16580511
Alignment:
Q  663 tttttcacaaatttccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtga 744  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | ||||||    
T  16580592 tttttcacaaattaccatacatcaagagatgcaatattgtcacaagccttgt-ggaagtctccattgataagaagcattgtga 16580511  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 663 - 744
Target Start/End: Original strand, 16614788 - 16614869
Alignment:
Q  663 tttttcacaaatttccatacatcaagagatgcaatattg-caaaagccttgtgggaagtctccattgataagaaaccttgtga 744  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | ||||||    
T  16614788 tttttcacaaattaccatacatcaagagatgcaatattgtcacaagccttgt-ggaagtctccattgataagaagcattgtga 16614869  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 16572865 - 16572802
Alignment:
Q  506 aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  16572865 aaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacattt 16572802  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 715
Target Start/End: Complemental strand, 16572573 - 16572520
Alignment:
Q  663 tttttcacaaatttccatacatcaagagatgcaatattg-caaaagccttgtgg 715  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16572573 tttttcacaaatttccatacatcaagagatgcaataatgtcaaaagccttgtgg 16572520  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 16580886 - 16580823
Alignment:
Q  506 aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  16580886 aaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacattt 16580823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 16614494 - 16614557
Alignment:
Q  506 aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  16614494 aaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacattt 16614557  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 16874747 - 16874684
Alignment:
Q  506 aaggatagataatttctcagtcaacttgaacgccaaagcctgcacccttgagtgttcaacattt 569  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||| | ||| |||||||||||    
T  16874747 aaggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacattt 16874684  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 16991724 - 16991798
Alignment:
Q  224 gatagaaacaatatttgtctagtttttatcacatcaacttccttttcacctataccactcaggagaaacttcaaa 298  Q
    |||||||  ||||| ||||| ||||||||| ||| ||||||||| ||||||||||||  ||||||||||||||||    
T  16991724 gatagaataaatatctgtcttgtttttatcgcataaacttccttctcacctataccaaacaggagaaacttcaaa 16991798  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 16573027 - 16572926
Alignment:
Q  385 tgatagtgagtatgtgaagtaaatgcaa----agtaaagcacaaactcccgtaagcctctgagaataggagatgtcttgacctctgcaacctgaaggagc 480  Q
    ||||| |||||||| |||||||||||||    ||| ||||||||||||||  |||| | ||||||||||| ||||||| ||  |||| ||||||||||||    
T  16573027 tgataatgagtatgagaagtaaatgcaacattagttaagcacaaactcccccaagcttttgagaataggacatgtcttcacgcctgccacctgaaggagc 16572928  T
Q  481 gg 482  Q
    ||    
T  16572927 gg 16572926  T

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