View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-20 (Length: 328)
Name: NF4837-Insertion-20
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 59 - 328
Target Start/End: Original strand, 47459842 - 47460111
Alignment:
| Q |
59 |
tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgcatcaaccaacgaggagttaatggatttggaaaattggaaggcgt |
158 |
Q |
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| T |
47459842 |
tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgtatcaaccaacgaggagttaatagatttggaaaattggaaggcgt |
47459941 |
T |
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| Q |
159 |
tgataactaaagttatctccttgactaagaagttaattactattctctctatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat |
258 |
Q |
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| T |
47459942 |
tgataactaaagttatctccttgactaagaagttaattactattctctatatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat |
47460041 |
T |
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| Q |
259 |
cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacaca |
328 |
Q |
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| T |
47460042 |
cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacaca |
47460111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 47459827 - 47459857
Alignment:
| Q |
8 |
aaaacgatactccaatttgaaggtgtatatt |
38 |
Q |
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| T |
47459827 |
aaaacgatactccaatttgaaggtgtatatt |
47459857 |
T |
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