View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4837-Insertion-3 (Length: 800)

Name: NF4837-Insertion-3
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4837-Insertion-3
NF4837-Insertion-3
[»] chr8 (8 HSPs)
chr8 (7-675)||(12199732-12200399)
chr8 (7-675)||(12444160-12444827)
chr8 (20-651)||(12194736-12195379)
chr8 (20-651)||(12439164-12439807)
chr8 (673-761)||(12199454-12199542)
chr8 (673-761)||(12443882-12443970)
chr8 (398-509)||(15348452-15348563)
chr8 (394-518)||(4032289-4032413)
[»] chr4 (52 HSPs)
chr4 (398-527)||(7904604-7904733)
chr4 (398-523)||(7238097-7238222)
chr4 (398-523)||(7770980-7771105)
chr4 (398-518)||(45372434-45372554)
chr4 (398-495)||(7789693-7789790)
chr4 (394-497)||(48170959-48171065)
chr4 (398-485)||(7822583-7822670)
chr4 (398-520)||(7774206-7774328)
chr4 (49-110)||(50669044-50669105)
chr4 (401-485)||(7813094-7813178)
chr4 (398-509)||(48862831-48862945)
chr4 (389-489)||(49044597-49044697)
chr4 (398-501)||(7765219-7765322)
chr4 (398-485)||(7800251-7800338)
chr4 (398-492)||(7907932-7908026)
chr4 (421-497)||(48735715-48735791)
chr4 (394-485)||(48891023-48891114)
chr4 (398-485)||(49041515-49041602)
chr4 (398-520)||(7877299-7877421)
chr4 (398-508)||(48156804-48156914)
chr4 (398-485)||(7786057-7786144)
chr4 (49-99)||(7908325-7908375)
chr4 (403-509)||(48902540-48902646)
chr4 (421-483)||(49048999-49049061)
chr4 (48-101)||(7237753-7237806)
chr4 (57-247)||(50250820-50251010)
chr4 (49-101)||(7877727-7877779)
chr4 (58-101)||(7771396-7771439)
chr4 (58-101)||(7790081-7790124)
chr4 (48-107)||(7813469-7813528)
chr4 (48-107)||(7822958-7823017)
chr4 (389-483)||(48148050-48148147)
chr4 (398-497)||(48870144-48870243)
chr4 (398-497)||(48885830-48885929)
chr4 (421-515)||(45366621-45366715)
chr4 (57-106)||(37827024-37827073)
chr4 (49-101)||(7773848-7773900)
chr4 (398-477)||(33134200-33134282)
chr4 (49-107)||(7765607-7765665)
chr4 (49-107)||(7786429-7786487)
chr4 (49-107)||(48852658-48852716)
chr4 (421-515)||(48898306-48898400)
chr4 (50-107)||(49048605-49048662)
chr4 (48-104)||(7800629-7800685)
chr4 (398-486)||(37827371-37827459)
chr4 (209-247)||(45372251-45372289)
chr4 (57-107)||(48170601-48170651)
chr4 (425-507)||(50668635-50668717)
chr4 (425-518)||(45385191-45385284)
chr4 (57-102)||(48147756-48147801)
chr4 (49-102)||(48898701-48898754)
chr4 (394-447)||(50251181-50251234)
[»] chr3 (6 HSPs)
chr3 (389-509)||(11006330-11006450)
chr3 (389-509)||(11024905-11025025)
chr3 (389-509)||(11015893-11016013)
chr3 (401-485)||(47452287-47452371)
chr3 (59-106)||(11005994-11006041)
chr3 (59-106)||(11024569-11024616)
[»] chr5 (4 HSPs)
chr5 (398-508)||(29687642-29687752)
chr5 (398-515)||(29695736-29695853)
chr5 (421-504)||(29712869-29712952)
chr5 (399-485)||(1812039-1812125)
[»] chr7 (3 HSPs)
chr7 (57-110)||(48883790-48883843)
chr7 (675-755)||(35535092-35535172)
chr7 (424-508)||(48883373-48883460)
[»] chr1 (7 HSPs)
chr1 (398-483)||(24340030-24340115)
chr1 (398-494)||(24322067-24322163)
chr1 (398-477)||(24309799-24309878)
chr1 (398-458)||(24366796-24366856)
chr1 (55-102)||(24310168-24310215)
chr1 (422-509)||(24415427-24415514)
chr1 (57-102)||(24367144-24367189)
[»] scaffold0508 (1 HSPs)
scaffold0508 (398-471)||(11890-11963)
[»] chr6 (4 HSPs)
chr6 (58-107)||(21979678-21979727)
chr6 (421-480)||(14193145-14193204)
chr6 (375-494)||(21979998-21980117)
chr6 (421-485)||(21015390-21015454)


Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 7 - 675
Target Start/End: Complemental strand, 12200399 - 12199732
Alignment:
Q  7 aaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 106  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200399 aaattccaactttgatgaagttttcaccaaggctggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12200300  T
Q  107 tgatgtcgatggaatgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatggattccatacgtagatatttgtccaac 206  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  12200299 tgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaac 12200200  T
Q  207 agtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200199 agtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggtt 12200100  T
Q  307 aatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgca 406  Q
    |||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200099 aatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgca 12200000  T
Q  407 aagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaatt 506  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199999 aagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaatt 12199900  T
Q  507 cataaggaatatacaacgtctctttcatcttcaccatgcgattgtgtttcttctctgccatgttcttgactctgttgcgcgtaaccctaggggatttcag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199899 cataaggaatatacaacgtctctttcatcttcaccatgcgattgtatttcttctctgccatgttcttgactctgttgcgcgtaaccctaggggatttcag 12199800  T
Q  607 gtgatgaaatatataggtgaataaatcagtattgtttttgagagggacgaagcccagggtaaataaatt 675  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  12199799 gtgatgaaatatataggtgaataaatcagtattgtttttgaga-ggacgaggcccagggaaaataaatt 12199732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 7 - 675
Target Start/End: Complemental strand, 12444827 - 12444160
Alignment:
Q  7 aaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 106  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444827 aaattccaactttgatgaagttttcaccaaggctggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12444728  T
Q  107 tgatgtcgatggaatgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatggattccatacgtagatatttgtccaac 206  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  12444727 tgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaac 12444628  T
Q  207 agtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444627 agtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggtt 12444528  T
Q  307 aatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgca 406  Q
    |||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444527 aatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgca 12444428  T
Q  407 aagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaatt 506  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444427 aagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaatt 12444328  T
Q  507 cataaggaatatacaacgtctctttcatcttcaccatgcgattgtgtttcttctctgccatgttcttgactctgttgcgcgtaaccctaggggatttcag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444327 cataaggaatatacaacgtctctttcatcttcaccatgcgattgtatttcttctctgccatgttcttgactctgttgcgcgtaaccctaggggatttcag 12444228  T
Q  607 gtgatgaaatatataggtgaataaatcagtattgtttttgagagggacgaagcccagggtaaataaatt 675  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  12444227 gtgatgaaatatataggtgaataaatcagtattgtttttgaga-ggacgaggcccagggaaaataaatt 12444160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 651
Target Start/End: Complemental strand, 12195379 - 12194736
Alignment:
Q  20 gatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatgga 119  Q
    |||||||||||||  |||| ||||  |  |||||||||||| |||||||||||||||||| | | |||||||||||||||    |||||| || |||       
T  12195379 gatgaagttttcactaaggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacctagaagatgacgtggattat 12195280  T
Q  120 atgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatat 219  Q
    ||| | | || ||  || |||||||||||||   ||       |||||| |||||||||||||||||||||||||  |||||| |||| | ||| |||||    
T  12195279 atgcaagaaatttgcaagcaaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatat 12195180  T
Q  220 aaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttca 319  Q
    |||||||||||| ||||||||||||||||| |||   |||||| |  |||| |||||| |||||||||| ||||  ||||||||||||||||||||||||    
T  12195179 aaaccctctgcacgaacctttaatttcataaaaaaa-taaccttttggaagtagaaaactatggtccagcgaaacagaatcatggttaatggatgtttca 12195081  T
Q  320 aaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgcaaagtgaggatcag 419  Q
    ||||||||| |||||||| || || ||| | |||||||||| ||  |||||||| |||| | ||||||||||||||| |||||||||||||| |||||||    
T  12195080 aaatctataaagcgaatttcagcaagaggtcgagttcttgatatggacacaatttttgctgcggaaacatcaacatgtgaatttgcaaagtgtggatcag 12194981  T
Q  420 ggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaatata 519  Q
     ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  12194980 agataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaagata 12194881  T
Q  520 caacgtctctttcatcttcaccatgcgattgtgtttcttctctgccatgtt-------------cttgactctgttgcgcgtaaccctaggggatttcag 606  Q
     |||||||||||||||||| |||||||| |||  ||||||||||   ||||             ||| ||| |||||||||||||||||||||||| ||     
T  12194880 taacgtctctttcatcttcgccatgcgagtgtaattcttctctgtggtgttccaggtgatgaaccttaactgtgttgcgcgtaaccctaggggattccaa 12194781  T
Q  607 gtgatgaaatatataggtgaataaatcagtattgtttttgagagg 651  Q
    ||||||||||  |||||||||||||| |||||||||||| |||||    
T  12194780 gtgatgaaatgcataggtgaataaattagtattgttttttagagg 12194736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 651
Target Start/End: Complemental strand, 12439807 - 12439164
Alignment:
Q  20 gatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatgga 119  Q
    |||||||||||||  |||| ||||  |  |||||||||||| |||||||||||||||||| | | |||||||||||||||    |||||| || |||       
T  12439807 gatgaagttttcactaaggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacctagaagatgacgtggattat 12439708  T
Q  120 atgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatat 219  Q
    ||| | | || ||  || |||||||||||||   ||       |||||| |||||||||||||||||||||||||  |||||| |||| | ||| |||||    
T  12439707 atgcaagaaatttgcaagcaaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatat 12439608  T
Q  220 aaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttca 319  Q
    |||||||||||| ||||||||||||||||| |||   |||||| |  |||| |||||| |||||||||| ||||  ||||||||||||||||||||||||    
T  12439607 aaaccctctgcacgaacctttaatttcataaaaaaa-taaccttttggaagtagaaaactatggtccagcgaaacagaatcatggttaatggatgtttca 12439509  T
Q  320 aaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcggaggaaacatcaacatgcgaatttgcaaagtgaggatcag 419  Q
    ||||||||| |||||||| || || ||| | |||||||||| ||  |||||||| |||| | ||||||||||||||| |||||||||||||| |||||||    
T  12439508 aaatctataaagcgaatttcagcaagaggtcgagttcttgatatggacacaatttttgctgcggaaacatcaacatgtgaatttgcaaagtgtggatcag 12439409  T
Q  420 ggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaatata 519  Q
     ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  12439408 agataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaagata 12439309  T
Q  520 caacgtctctttcatcttcaccatgcgattgtgtttcttctctgccatgtt-------------cttgactctgttgcgcgtaaccctaggggatttcag 606  Q
     |||||||||||||||||| |||||||| |||  ||||||||||   ||||             ||| ||| |||||||||||||||||||||||| ||     
T  12439308 taacgtctctttcatcttcgccatgcgagtgtaattcttctctgtggtgttccaggtgatgaaccttaactgtgttgcgcgtaaccctaggggattccaa 12439209  T
Q  607 gtgatgaaatatataggtgaataaatcagtattgtttttgagagg 651  Q
    ||||||||||  |||||||||||||| |||||||||||| |||||    
T  12439208 gtgatgaaatgcataggtgaataaattagtattgttttttagagg 12439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 12199542 - 12199454
Alignment:
Q  673 attgaacttggctaacatggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaaaaatag 761  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199542 attgaagttggctaacgtggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaaaaatag 12199454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 12443970 - 12443882
Alignment:
Q  673 attgaacttggctaacatggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaaaaatag 761  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12443970 attgaagttggctaacgtggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaaaaatag 12443882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 398 - 509
Target Start/End: Complemental strand, 15348563 - 15348452
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||||| |||| |||||||| ||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||| ||||||   || |||||||    
T  15348563 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctctctagaatttgaa 15348464  T
Q  498 tgattaattcat 509  Q
      ||||||||||    
T  15348463 ctattaattcat 15348452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 518
Target Start/End: Original strand, 4032289 - 4032413
Alignment:
Q  394 atgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatt 493  Q
    ||||||||||||||||||||||||||  |||||||  ||||| || ||||||||||| ||||||| || |||||||||||  || |  ||||| | ||||    
T  4032289 atgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatt 4032388  T
Q  494 tgaatgattaattcataaggaatat 518  Q
    || ||||| ||||||| ||| ||||    
T  4032389 tggatgatcaattcatgaggcatat 4032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 398 - 527
Target Start/End: Complemental strand, 7904733 - 7904604
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||| ||||||| || || ||||||||    
T  7904733 gaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaa 7904634  T
Q  498 tgattaattcataaggaatatacaacgtct 527  Q
    | || ||||||  ||||| |||||||||||    
T  7904633 taatcaattcacgaggaagatacaacgtct 7904604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 398 - 523
Target Start/End: Original strand, 7238097 - 7238222
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||| ||||| |    
T  7238097 gaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttgga 7238196  T
Q  498 tgattaattcataaggaatatacaac 523  Q
    |||||| ||||| ||| | |||||||    
T  7238197 tgattagttcatgaggcagatacaac 7238222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 398 - 523
Target Start/End: Complemental strand, 7771105 - 7770980
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||| |    
T  7771105 gaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttgga 7771006  T
Q  498 tgattaattcataaggaatatacaac 523  Q
    | |||| ||||| ||| | |||||||    
T  7771005 ttattagttcatgaggcagatacaac 7770980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 398 - 518
Target Start/End: Original strand, 45372434 - 45372554
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| || || |||||||    
T  45372434 gaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaa 45372533  T
Q  498 tgattaattcataaggaatat 518  Q
    | || ||||||| ||| ||||    
T  45372534 tcatcaattcatgaggcatat 45372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 398 - 495
Target Start/End: Complemental strand, 7789790 - 7789693
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttg 495  Q
    |||||| ||||||||||||| | ||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  7789790 gaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttg 7789693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 48170959 - 48171065
Alignment:
Q  394 atgcgaatttgcaaagtgaggatcagg---gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcagg 490  Q
    ||||||||||||||||||||||||| |   |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||  |||||||||||     
T  48170959 atgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagcaga 48171058  T
Q  491 atttgaa 497  Q
    |||||||    
T  48171059 atttgaa 48171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 7822670 - 7822583
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||| || |||| ||||||||||||||||||    
T  7822670 gaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7822583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 520
Target Start/End: Original strand, 7774206 - 7774328
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||| || ||||||| ||||||||||||||||  |||||||||||||||||||   | ||||||||||||||||| || || || ||||||||    
T  7774206 gaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaa 7774305  T
Q  498 tgattaattcataaggaatatac 520  Q
    | || ||||||| ||||| ||||    
T  7774306 taatcaattcatgaggaagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 50669105 - 50669044
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 110  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669105 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 50669044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 7813178 - 7813094
Alignment:
Q  401 tttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||||||| ||||||| || |||| ||||||||||||||||||    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7813094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 398 - 509
Target Start/End: Complemental strand, 48862945 - 48862831
Alignment:
Q  398 gaatttgcaaagtgaggatcagg---gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 494  Q
    ||||||||||||||||||||| |   ||||||||||||||| ||||| ||||| ||||||||||  | ||||||||||||||| ||||| |||||||||     
T  48862945 gaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggatta 48862846  T
Q  495 gaatgattaattcat 509  Q
    | ||||| |||||||    
T  48862845 ggatgatcaattcat 48862831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 389 - 489
Target Start/End: Original strand, 49044597 - 49044697
Alignment:
Q  389 tcaacatgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 488  Q
    |||| ||| |||||||||||||| |  | || |||||||||||||||| ||||||||||||| ||||||| |||||||||| |||| |||||||||||||    
T  49044597 tcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagca 49044696  T
Q  489 g 489  Q
    |    
T  49044697 g 49044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 501
Target Start/End: Complemental strand, 7765322 - 7765219
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||  || ||||||  ||| |||||||||||||| ||||||| ||| | |||||    
T  7765322 gaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaa 7765223  T
Q  498 tgat 501  Q
    ||||    
T  7765222 tgat 7765219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 7800338 - 7800251
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    |||||||||||| | ||||||| || ||||||||||||||| ||||||||||| ||||||| || |||| ||||||||||||||||||    
T  7800338 gaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7800251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 398 - 492
Target Start/End: Complemental strand, 7908026 - 7907932
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 492  Q
    ||||||||||| || ||| ||| ||||||||||||||||||||||| |||| | ||||||| |  |||||||||||||||||||||||| |||||    
T  7908026 gaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggat 7907932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 48735715 - 48735791
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||| |||||||| || |||||||    
T  48735715 gataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaa 48735791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 48891114 - 48891023
Alignment:
Q  394 atgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||||||| |||||||| | || |||||||||||| ||||||||||| |||||||||| || ||||||||| ||||  |||||||    
T  48891114 atgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctca 48891023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 49041515 - 49041602
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||| || ||||||| ||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||| ||||| ||||    
T  49041515 gaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctca 49041602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 520
Target Start/End: Complemental strand, 7877421 - 7877299
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||| |  ||||||| ||||||||||||||||  ||||||||  |||||||||| || ||||||||||||| ||||||  | ||||||||| |    
T  7877421 gaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttgga 7877322  T
Q  498 tgattaattcataaggaatatac 520  Q
    | || ||||||| ||||| ||||    
T  7877321 taatcaattcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 508
Target Start/End: Original strand, 48156804 - 48156914
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||| |||| ||| | ||||||||||||||| ||||||||||| || ||||||| || ||||||||||||||| ||||  |  ||||||||||    
T  48156804 gaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaa 48156903  T
Q  498 tgattaattca 508  Q
    | || ||||||    
T  48156904 ttatcaattca 48156914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 7786144 - 7786057
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||| |||||||||| ||||| ||||| ||||  ||||||||| ||||||||  ||| |||||| ||||||||||||||||    
T  7786144 gaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctca 7786057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 7908375 - 7908325
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 99  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7908375 ggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 403 - 509
Target Start/End: Complemental strand, 48902646 - 48902540
Alignment:
Q  403 tgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgatt 502  Q
    |||||||||  ||||||  |||||||||||||| ||||||||||||||||||||||  |  |||||||| |||||||||| | |||  ||||| |||||     
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  503 aattcat 509  Q
    |||||||    
T  48902546 aattcat 48902540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 49048999 - 49049061
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacct 483  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  49048999 gataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacct 49049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 7237753 - 7237806
Alignment:
Q  48 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 101  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  7237753 gggaaaatacaaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 50250820 - 50251010
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggaatgtatgtaacttcaaatcaaaaggagacaaaggtan 156  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    |||  || | | ||| ||  |||||||| ||||||||||||     
T  50250820 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtat 50250919  T
Q  157 nnnnnngtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttca 247  Q
          ||||| ||  | |||||||||||||| |||||   |||   ||||||| || |||||||| ||||| ||||||||||||||||||    
T  50250920 ttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatttca 50251010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 7877779 - 7877727
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 101  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  7877779 ggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  58 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  58 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 7813528 - 7813469
Alignment:
Q  48 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    |||| |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  7813528 gggaaaatacaaccagcacgtaatcatctcttgactggtcataaccaaaaccatatagat 7813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 7823017 - 7822958
Alignment:
Q  48 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    |||| |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  7823017 gggaaaatacaaccagcacgtaatcatctcttgactggtcataaccaaaaccatatagat 7822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 483
Target Start/End: Original strand, 48148050 - 48148147
Alignment:
Q  389 tcaacatgcgaatttgcaaagtgaggatcagg---gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacct 483  Q
    |||| ||| |||||||| |||||||||||| |   ||||||||||||||| |||||||| |||||||||||||  | |||||||||||| || |||||    
T  48148050 tcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacct 48148147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 48870243 - 48870144
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||||||||  | ||||| | ||||||| ||||||| ||||||||||| ||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  48870243 gaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 48870144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 48885929 - 48885830
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    |||||||||||  | ||||| | ||||||| ||||||| ||||||||||| ||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  48885929 gaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 48885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 45366621 - 45366715
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaa 515  Q
    |||||||||||||||  |||||||||| || ||||||| || |||||||||||| || ||||| || |||||||| || || ||||||| |||||    
T  45366621 gataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaa 45366715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 37827024 - 37827073
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 106  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  37827024 aaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 37827073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 7773848 - 7773900
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 101  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||||||||    
T  7773848 ggacaatacaaccaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 33134200 - 33134282
Alignment:
Q  398 gaatttgcaaagtgaggatca---gggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccgg 477  Q
    |||||||||||||||||||||   | |||||||||||| || | ||||||||| ||||||||||  | |||||||||||||||    
T  33134200 gaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccgg 33134282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 7765665 - 7765607
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    |||||||||||||||||  ||||||||||| ||| | || |||||||||||||||||||    
T  7765665 ggacaataaaaccaccacataatcatctctagactgatcgtaaccaaaaccatatagat 7765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 7786487 - 7786429
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    |||||||||||||||||  ||||||||||| ||| | || |||||||||||||||||||    
T  7786487 ggacaataaaaccaccacataatcatctctagactgatcgtaaccaaaaccatatagat 7786429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 48852716 - 48852658
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    ||||| |||||| ||||||||||||||  ||||| ||||||| ||||||||||||||||    
T  48852716 ggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagat 48852658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 515
Target Start/End: Complemental strand, 48898400 - 48898306
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaa 515  Q
    |||||| || ||||| |||||||||||||| ||||||| |  |||||||||||| || |  |||||||| ||||||||||  ||||||| |||||    
T  48898400 gataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaa 48898306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 49048605 - 49048662
Alignment:
Q  50 gacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    ||||||| ||||||||| ||||||||| ||||  ||||||| ||||||||||||||||    
T  49048605 gacaatacaaccaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 49048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 7800685 - 7800629
Alignment:
Q  48 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatata 104  Q
    |||| |||| ||||| || ||| |||||||||||| |||||||||||||||||||||    
T  7800685 gggaaaatacaaccagcacgtactcatctcttgactggtcataaccaaaaccatata 7800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 398 - 486
Target Start/End: Original strand, 37827371 - 37827459
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcag 486  Q
    |||||||||||||  |||| ||  |||||||  ||||||||||||||||| ||| | |||| || |||||||||||| | |||||||||    
T  37827371 gaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcactgacaacctcag 37827459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 45372251 - 45372289
Alignment:
Q  209 tgcaagaatataaaccctctgcatgaacctttaatttca 247  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  45372251 tgcaaaaatataaaccctctacatgaacctttaatttca 45372289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 48170601 - 48170651
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    ||||||| ||||||||||||||| || | ||||| ||||||||||||||||    
T  48170601 aaaccactaagtaatcatctcttaactgatcatacccaaaaccatatagat 48170651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 507
Target Start/End: Complemental strand, 50668717 - 50668635
Alignment:
Q  425 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 507  Q
    ||||||||||| || |||||||| || ||||||| || |||| | ||||| |||||||||| ||  ||||||||||| |||||    
T  50668717 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 518
Target Start/End: Original strand, 45385191 - 45385284
Alignment:
Q  425 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaatat 518  Q
    ||||||||||| |||||||||||  ||||||||| ||  |||||||| || || ||||| || |||||||| || || ||||||| ||| ||||    
T  45385191 agagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattcattaggcatat 45385284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 48147756 - 48147801
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 102  Q
    |||||||||||||||||||| || || ||||||| |||||||||||    
T  48147756 aaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 48898754 - 48898701
Alignment:
Q  49 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 102  Q
    ||||||||||||||| |||||||||||| || || | ||||| |||||||||||    
T  48898754 ggacaataaaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 50251181 - 50251234
Alignment:
Q  394 atgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaac 447  Q
    |||| |||||||| |||| ||||||| ||||||||||||||| |||||| ||||    
T  50251181 atgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 389 - 509
Target Start/End: Original strand, 11006330 - 11006450
Alignment:
Q  389 tcaacatgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 488  Q
    |||| |||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||| ||    
T  11006330 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 11006429  T
Q  489 ggatttgaatgattaattcat 509  Q
     |||||| ||||| |||||||    
T  11006430 agatttgtatgatcaattcat 11006450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 389 - 509
Target Start/End: Original strand, 11024905 - 11025025
Alignment:
Q  389 tcaacatgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 488  Q
    |||| |||||| |||||||||| | |||||| ||||||||  ||||||||||||||||| |||||||||| ||  |||||||||||||| ||||||| ||    
T  11024905 tcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 11025004  T
Q  489 ggatttgaatgattaattcat 509  Q
     |||||| ||||| |||||||    
T  11025005 tgatttgtatgatcaattcat 11025025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 509
Target Start/End: Original strand, 11015893 - 11016013
Alignment:
Q  389 tcaacatgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 488  Q
    |||| |||||| |||||||||| | |||||| ||||||||  ||| ||||||||||||| |||||||||| ||  |||||||||||||| ||||||| ||    
T  11015893 tcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 11015992  T
Q  489 ggatttgaatgattaattcat 509  Q
     |||||| || || |||||||    
T  11015993 tgatttgtattatcaattcat 11016013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 47452287 - 47452371
Alignment:
Q  401 tttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||| ||||||||| |||||||||||||||||||||| |||  || ||||| | || |||||||||||||||||||||||    
T  47452287 tttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctca 47452371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 11005994 - 11006041
Alignment:
Q  59 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  11005994 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 11024569 - 11024616
Alignment:
Q  59 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  11024569 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 508
Target Start/End: Complemental strand, 29687752 - 29687642
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||||||||| | ||  || ||||||||||| |||||||||||||| ||||| | || |||||||||||| || ||| | || ||||||||||    
T  29687752 gaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaa 29687653  T
Q  498 tgattaattca 508  Q
    |||| ||||||    
T  29687652 tgatcaattca 29687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 398 - 515
Target Start/End: Complemental strand, 29695853 - 29695736
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 497  Q
    ||||||||||||||||| | ||  |||||||| |||||| |||||||||| ||||||||||  | ||||||||| || || ||||| |  ||||||||||    
T  29695853 gaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggatttgaa 29695754  T
Q  498 tgattaattcataaggaa 515  Q
    ||||||| ||| ||||||    
T  29695753 tgattaactcaaaaggaa 29695736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 504
Target Start/End: Original strand, 29712869 - 29712952
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 504  Q
    |||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  29712869 gataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 29712952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 1812125 - 1812039
Alignment:
Q  399 aatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||||| ||||  | |||||||||||||||| |||||||||| |||||| ||| ||  ||| ||||||| || |||||||    
T  1812125 aatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctca 1812039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 48883843 - 48883790
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 110  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  48883843 aaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgat 48883790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 755
Target Start/End: Original strand, 35535092 - 35535172
Alignment:
Q  675 tgaacttggctaacatggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaa 755  Q
    |||| ||||||||  ||||||||||| |||||| ||||||||||||||| || ||||||||||||| | ||||||||||||    
T  35535092 tgaagttggctaatgtggctcctaatgttgtgacatataatactttgattaatgggtttggtcaagctggtaatagtgaaa 35535172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 48883460 - 48883373
Alignment:
Q  424 aagagaaaaccatgacttacaaacacattt---gaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 508  Q
    |||||||||||| | |||||||||||||||   ||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  48883460 aagagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 24340115 - 24340030
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacct 483  Q
    |||||||||||||||  ||||| |||||| ||||||||||||||||||||| |||||||||  | ||||||||| ||||| |||||    
T  24340115 gaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacct 24340030  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 494
Target Start/End: Complemental strand, 24322163 - 24322067
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 494  Q
    |||||||||||  ||||||  | ||||||||||||||| ||||||||||| ||||||||||  | ||||||||||||| ||||||| || |||||||    
T  24322163 gaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 24309878 - 24309799
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccgg 477  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||  |||||||||  | ||||||||| |||||    
T  24309878 gaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 24309799  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 24366856 - 24366796
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaac 458  Q
    ||||||||||||| |||||  | ||||||||||||||||||||| ||||||||||||||||    
T  24366856 gaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaac 24366796  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 24310215 - 24310168
Alignment:
Q  55 taaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 102  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||    
T  24310215 taaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 509
Target Start/End: Complemental strand, 24415514 - 24415427
Alignment:
Q  422 ataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcat 509  Q
    |||||||||||||| ||||||| ||| ||||||||||  | ||||||||| ||||| || ||||  ||||||||  |||| |||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcat 24415427  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 24367189 - 24367144
Alignment:
Q  57 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 102  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  24367189 aaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

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Target: scaffold0508 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 11963 - 11890
Alignment:
Q  398 gaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagactt 471  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||  |||||||||  | |||||||||    
T  11963 gaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 21979678 - 21979727
Alignment:
Q  58 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 107  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 14193145 - 14193204
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaa 480  Q
    ||||||||||| |||  ||||||||||||||||||||| ||| |||||||||||| ||||    
T  14193145 gataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcaccagcaa 14193204  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 375 - 494
Target Start/End: Original strand, 21979998 - 21980117
Alignment:
Q  375 ttgcggaggaaacatcaacatgcgaatttgcaaagtgaggatcagggataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcac 474  Q
    |||||| || || ||||| ||| ||||| |||||||  |||| || ||| ||||||||||| |||||||||||||| ||||||| | | |||||||| ||    
T  21979998 ttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactttac 21980097  T
Q  475 cggcaacctcagcaggattt 494  Q
     ||  |||| ||||||||||    
T  21980098 tggttaccttagcaggattt 21980117  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 21015454 - 21015390
Alignment:
Q  421 gataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctca 485  Q
    ||||||||||||| || ||||||||||||| ||||||| || ||||||| | ||||| |||||||    
T  21015454 gataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctca 21015390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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