View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-5 (Length: 782)
Name: NF4837-Insertion-5
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-5 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 729; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Original strand, 35896511 - 35897283
Alignment:
| Q |
8 |
acaagtaccgatactagagagatttgctcttctcataacaaccacggtcatatgggcatatgcacatctattgacagcgagtggagcatacaaacaccgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35896511 |
acaagtaccgatactagagagatttgctcttctcataacaaccacggtcatatgggcatatgcacatctattgacagcgagtggagcatacaaacaccgg |
35896610 |
T |
|
| Q |
108 |
ccggatgtaactcaacatagttgtaggacagacagggctaatctcatttcttctgctccttggttggtatcaatagcatcgttgttgaatatttgcatat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35896611 |
ccggatgtaactcaacatagttgtaggacagacagggctaatctcatttcttctgctccttggttggtaacaatagcatcgttgttgaatatttgcatat |
35896710 |
T |
|
| Q |
208 |
caatgtagcaaagaaaatattgagctatattggcattgactcttgaaacatgtcggtgcaggataaagattccataccctcttgagtggggtgctcctac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35896711 |
caatgtagcaaagaaaatattgagctatattggcattgactcttgaaacatgtcggtgcaggataaagattccataccctcttgagtggggtgctcctac |
35896810 |
T |
|
| Q |
308 |
atttgatgctggccactcttttggaatgatggctgctgttttagtctcattagttgaggtaatttcaacttcataaaatgactatcattgagaaattata |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35896811 |
atttgatgctggccactcttttggaatgatggctgctgttttagtctcattagttgaggtaatttcaacttcataaaatgactatcattgagaaattata |
35896910 |
T |
|
| Q |
408 |
ccggtatgcttatgtaacacacaaactcgtttacattttcgactaacgcttatcgccgtttattattttgacagtcaactggagcattcaaagctgcatc |
507 |
Q |
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| T |
35896911 |
ccggtatgcttatgtaacacacaaactcgtttacattttcgactaacacttatcgccgtttattattttgacagtcaactggagcattcaaagctgcatc |
35897010 |
T |
|
| Q |
508 |
gcgtctagcaagtgccacaccaccgcctgctcatgtcctgagccgtggtatcggttggcagggaattggaattttgctgaatggcctttttggaacacta |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35897011 |
gcgtctagcaagtgccacaccaccgcctgctcatgtcctgagccgtggtatcggttggcagggaattggaattttgctgaatggccttttcggaacacta |
35897110 |
T |
|
| Q |
608 |
accggttcaacagtttctgtgtgcgtgctattcttattatcgttcatatagttttcannnnnnngagggacagagattgattcttttagtatcatgacag |
707 |
Q |
| |
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| T |
35897111 |
accggttcaacagtttctgtgtgcgtgctattcttattatcgttcatatagttttca-ttttttgagggacagagattgattcttttagtatcatgacag |
35897209 |
T |
|
| Q |
708 |
ggagaatgtagggcttctaggaagcaaccgtgttgggcagccgaagggttattcaagtttctgctggatttatga |
782 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35897210 |
ggagaatgtagggcttctaggaagcaaccgtgtt-ggcagccgaagggttattcaagtttctgctggatttatga |
35897283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 473 - 782
Target Start/End: Original strand, 35903007 - 35903313
Alignment:
| Q |
473 |
ttttgacagtcaactggagcattcaaagctgcatcgcgtctagcaagtgccacaccaccgcctgctcatgtcctgagccgtggtatcggttggcagggaa |
572 |
Q |
| |
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||||||||||||||||||||||||||||| || | | ||||||||||||||||||||| ||||||| ||||||||||| | ||| ||||||||||||| |
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| T |
35903007 |
ttttgacagtcaactggagcattcaaagccgcgtggtatctagcaagtgccacaccaccttctgctcacgtcctgagccgcgatattggttggcagggaa |
35903106 |
T |
|
| Q |
573 |
ttggaattttgctgaatggcctttttggaacactaaccggttcaacagtttctgtgtgcgtgctattcttattatcgttcatatagttttcannnnnnng |
672 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |||| || |||||||||| ||||||||||||||| | |
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| T |
35903107 |
ttggaactttgctgaatggccttttcagaacactaactggttcaacagtttctgtgtacgtgtta-tcttattatcattcatatagttttca-ttttttg |
35903204 |
T |
|
| Q |
673 |
agggacagagattgattcttttagtatcatgacagggagaatgtagggcttctaggaagcaaccgtgttgggcagccgaagggttattcaagtttctgct |
772 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
35903205 |
agggacagaaattgattcttttagtatcaagacagagagaatgtaggacttctaggaagcaaccgtgtt-ggcagccgaagggttattcaagtttctggt |
35903303 |
T |
|
| Q |
773 |
ggatttatga |
782 |
Q |
| |
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|||||||||| |
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| T |
35903304 |
ggatttatga |
35903313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 35902465 - 35902645
Alignment:
| Q |
8 |
acaagtaccgatactagagagatttgctcttctcataacaaccacggtcatatgggcatatgcacat--ctattgacagcgagtggagcatacaaacacc |
105 |
Q |
| |
|
||||||||||||||||| | |||| | || ||||||| ||||||||| || |||||||||||||| || || ||||| |||||||||||||||||| |
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| T |
35902465 |
acaagtaccgatactagcgtgattcacactactcataataaccacggtggtaagggcatatgcacataactcttaacagcaagtggagcatacaaacacg |
35902564 |
T |
|
| Q |
106 |
ggccggatgtaactcaacatagttgtaggacagacagggctaatctcatttcttctgctccttggttggtatcaatagcat |
186 |
Q |
| |
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|||| || |||||||||||| ||| || | |||||||||||| |||||||||||||||| |||||||||| ||||||||| |
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| T |
35902565 |
ggccagaattaactcaacataattgcagaagagacagggctaacctcatttcttctgctcattggttggtaccaatagcat |
35902645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 205 - 375
Target Start/End: Original strand, 35902724 - 35902895
Alignment:
| Q |
205 |
tatcaatgtagcaaagaaaatattgagctatattggcattgactcttgaaacatgtcggtgcaggataaagattcca-------taccctcttgagtggg |
297 |
Q |
| |
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||||||| ||||||| ||||| ||||||||| |||||||||||||| || ||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
35902724 |
tatcaatctagcaaacaaaatgttgagctat--tggcattgactctttaa-catgt---tgcaggataaagattccatagtccataccctcttgaatggg |
35902817 |
T |
|
| Q |
298 |
gtgctcctacatttgatgctggccactcttttggaatgatggctgctgttttagtctcattagttgaggtaatttcaa |
375 |
Q |
| |
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||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||| ||| |||||| |
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| T |
35902818 |
gtgcttctacatttgatgctggtcattcttttggaatgattgctgctgttttagtctcattaattgaagtattttcaa |
35902895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 476 - 629
Target Start/End: Original strand, 5043733 - 5043886
Alignment:
| Q |
476 |
tgacagtcaactggagcattcaaagctgcatcgcgtctagcaagtgccacaccaccgcctgctcatgtcctgagccgtggtatcggttggcagggaattg |
575 |
Q |
| |
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||||||||||||||||||| || |||||| || || ||||||||||| ||||| |||||| ||||||| || || || ||| | || ||||||||||||| |
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| T |
5043733 |
tgacagtcaactggagcatacacagctgcctcccggctagcaagtgcaacaccgccgcctcctcatgttctaagtcgcggtgttggctggcagggaattg |
5043832 |
T |
|
| Q |
576 |
gaattttgctgaatggcctttttggaacactaaccggttcaacagtttctgtgt |
629 |
Q |
| |
|
|||| ||| | ||||| || ||||||||||| || |||||| | |||||||||| |
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| T |
5043833 |
gaatcttgttaaatggactatttggaacactgactggttcatctgtttctgtgt |
5043886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 5043367 - 5043469
Alignment:
| Q |
266 |
caggataaagattccataccctcttgagtggggtgctcctacatttgatgctggccactcttttggaatgatggctgctgttttagtctcattagttgag |
365 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||| |||| || ||||||||||||||||| ||||| ||| ||||| |
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| T |
5043367 |
caggatgaagattccatacccttttgagtggggttttcctacatttgatgttggccatgctttcggcatgatggctgctgttttggtctccttaattgag |
5043466 |
T |
|
| Q |
366 |
gta |
368 |
Q |
| |
|
||| |
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|
| T |
5043467 |
gta |
5043469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 5043093 - 5043187
Alignment:
| Q |
8 |
acaagtaccgatactagagagatttgctcttctcataacaaccacggtcatatgggcatatgcacatctattgacagcgagtggagcatacaaac |
102 |
Q |
| |
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|||| |||| |||||||||||||||||| | || ||| ||||||| | |||||||| ||||||||||| || ||| | |||||| ||||||||| |
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| T |
5043093 |
acaactaccaatactagagagatttgctttgcttatatcaaccacaattatatgggcctatgcacatctcttaacaacaagtggaacatacaaac |
5043187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 782
Target Start/End: Original strand, 5043938 - 5044036
Alignment:
| Q |
683 |
attgattcttttagtatcatgacagggagaatgtagggcttctaggaagcaaccgtgttgggcagccgaagggttattcaagtttctgctggatttatga |
782 |
Q |
| |
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|||||||||| ||| | |||| ||| ||||||||||||||||||||||| | |||||| || || ||||| || |||||| |||| ||||| ||||||| |
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| T |
5043938 |
attgattcttatagaaccatggcagagagaatgtagggcttctaggaagtactcgtgtt-ggtagtcgaagagtcattcaaatttcagctggctttatga |
5044036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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