View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4837-Insertion-7 (Length: 716)

Name: NF4837-Insertion-7
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4837-Insertion-7
NF4837-Insertion-7
[»] chr1 (17 HSPs)
chr1 (56-247)||(4570783-4570978)
chr1 (56-247)||(10218839-10219036)
chr1 (640-716)||(4015229-4015305)
chr1 (56-188)||(4014984-4015122)
chr1 (56-242)||(21855402-21855588)
chr1 (56-257)||(4016791-4016991)
chr1 (57-265)||(4366515-4366723)
chr1 (379-511)||(4570561-4570693)
chr1 (372-511)||(4015270-4015406)
chr1 (59-165)||(17560795-17560901)
chr1 (462-511)||(21855820-21855869)
chr1 (56-247)||(39379080-39379271)
chr1 (362-440)||(21855711-21855786)
chr1 (640-716)||(4570665-4570741)
chr1 (294-335)||(4016998-4017039)
chr1 (464-512)||(4017168-4017216)
chr1 (458-511)||(10218605-10218658)
[»] chr5 (4 HSPs)
chr5 (56-242)||(24330918-24331104)
chr5 (462-511)||(24331336-24331385)
chr5 (362-440)||(24331227-24331302)
chr5 (56-101)||(18964849-18964894)
[»] chr3 (1 HSPs)
chr3 (56-260)||(3625581-3625785)
[»] chr7 (17 HSPs)
chr7 (56-155)||(29922012-29922111)
chr7 (56-155)||(29867191-29867287)
chr7 (57-138)||(29874480-29874561)
chr7 (56-247)||(29454122-29454313)
chr7 (59-258)||(29859303-29859502)
chr7 (56-142)||(29881221-29881307)
chr7 (84-247)||(29885108-29885271)
chr7 (56-158)||(29445675-29445777)
chr7 (61-260)||(29920067-29920266)
chr7 (56-340)||(29106581-29106865)
chr7 (56-109)||(29899372-29899425)
chr7 (60-158)||(29895415-29895516)
chr7 (56-102)||(14076683-14076729)
chr7 (56-102)||(14386711-14386757)
chr7 (206-260)||(29881103-29881157)
chr7 (56-113)||(22063636-22063693)
chr7 (56-101)||(22100499-22100544)
[»] chr4 (6 HSPs)
chr4 (56-247)||(3557586-3557777)
chr4 (56-247)||(3560977-3561168)
chr4 (56-192)||(3565659-3565795)
chr4 (56-114)||(53774833-53774891)
chr4 (365-407)||(3561304-3561346)
chr4 (56-113)||(11971001-11971058)
[»] scaffold0867 (1 HSPs)
scaffold0867 (56-101)||(4688-4733)
[»] chr6 (1 HSPs)
chr6 (68-113)||(20770644-20770689)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 4570978 - 4570783
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctccca----gc 151  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||     |    
T  4570978 tgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacac 4570879  T
Q  152 acactaatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
    |||| |||||| |||  ||  ||||| ||||||||||  ||||  |||| | ||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  4570878 acaccaatagtaggctagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaata 4570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 10219036 - 10218839
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  || |||||||||||||||| || |||| |||||    
T  10219036 tgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaaggcaaccccccaacacac 10218937  T
Q  156 taatagttggcgcgt------caggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
     ||||||||| | ||       | |||  |||| ||||||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  10218936 caatagttggtgtgttgtacgaatgcgtcacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaata 10218839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 640 - 716
Target Start/End: Original strand, 4015229 - 4015305
Alignment:
Q  640 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacat 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015229 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacat 4015305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 4014984 - 4015122
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatca------gtttccttgtgtgaataagaaaaacaaaggcagcctccca 149  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||      |||||| ||||  |||||||||||||||||||||||||||    
T  4014984 tgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaatatcaaaatgagtttccctgtgcaaataagaaaaacaaaggcagcctccca 4015083  T
Q  150 gcacactaatagttggcgcgtcaggcggtacttcatcaa 188  Q
    |||||| ||||||||||| ||||||| | ||||||||||    
T  4015084 gcacaccaatagttggcgagtcaggcagcacttcatcaa 4015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 21855402 - 21855588
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||||||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||  ||||| ||||||||||| ||||| | ||  ||||    
T  21855402 tgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaagacagcccctcaatacac 21855501  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaa 242  Q
     |||||||||| | |  ||||| |||||||||||||||   |||||  ||||||||||||||||||| ||| ||||||| |||||||    
T  21855502 caatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaa 21855588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 4016791 - 4016991
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    |||||||| ||||||||||  |||||||||||||| ||||| |||   | ||  |||| | | |  ||||||||||||||||||||||| |||| |||||    
T  4016791 tgagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctataggaataagaaaaacaaaggcagccccccaacacac 4016890  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattg 255  Q
    |||||||||||  || | ||||  ||| |||||||||||  |||| | ||||||||||||||||||| || |||||||| ||||||| ||||||||||||    
T  4016891 taatagttggcatgtaaagcggccctttatcaaaaccacgaggcaccatgtattgattgtatgtctccgt-cccaaatcaagagaaacaatagtaaattg 4016989  T
Q  256 tt 257  Q
    ||    
T  4016990 tt 4016991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 265
Target Start/End: Original strand, 4366515 - 4366723
Alignment:
Q  57 gagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacact 156  Q
    |||||||||| ||||||| ||| ||||||||||| ||||||| ||||| |||||||| |||||  ||||||||||||||||||||| | |||| |||||     
T  4366515 gagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttgtaagaataagaaaaacaaaggcagtcccccaacacacc 4366614  T
Q  157 aatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattgt 256  Q
    ||  |||||  |   ||| || ||||| ||||||||||  |||| |  |||||||||||||||||| || |||| ||| || |||| ||||  ||||||     
T  4366615 aactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgc 4366714  T
Q  257 tcaatggta 265  Q
    |||| ||||    
T  4366715 tcaacggta 4366723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 379 - 511
Target Start/End: Complemental strand, 4570693 - 4570561
Alignment:
Q  379 aggaaaactttcgatatttctccaaacatcacgaccacccaagttgagaactctcacctctggttgttgattaat-attgcagaacgccaccactttata 477  Q
    |||||||||||| ||||||||||||||||||  ||||||||| ||||||||||| |||||| | || ||  |  | ||| ||| ||||||||||||||||    
T  4570693 aggaaaactttcaatatttctccaaacatcatcaccacccaaattgagaactctgacctct-gatgctgtctcttgattacagtacgccaccactttata 4570595  T
Q  478 agttccggttgaattatcgcatccaaaggcaaag 511  Q
    |||| || |||||||||| ||||||||| |||||    
T  4570594 agtttcgtttgaattatcacatccaaagccaaag 4570561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 511
Target Start/End: Original strand, 4015270 - 4015406
Alignment:
Q  372 gaacaacaggaaaactttcgatatttctccaaacatcacgaccacccaagttgagaactctcacctctggttgttgattaatattg-cagaacgccacca 470  Q
    ||||||||||||||||||| || |||||||||||||||    ||||||||||||||||| |||| |||| | ||||  |    ||  |||||||||||||    
T  4015270 gaacaacaggaaaactttcaatgtttctccaaacatcaa---cacccaagttgagaactttcacatctgat-gttgtctctcgtttacagaacgccacca 4015365  T
Q  471 ctttataagttccggttgaattatcgcatccaaaggcaaag 511  Q
    ||||||||| ||| ||||||||||| |||||||||||||||    
T  4015366 ctttataagctccagttgaattatcacatccaaaggcaaag 4015406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 17560795 - 17560901
Alignment:
Q  59 gtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacactaa 158  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| | |||  |||||||||   |||||||||||||||| ||| | |||| ||||| ||    
T  17560795 gtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaatcgatttccttgtaacaataagaaaaacaaagacagtcccccaacacaccaa 17560894  T
Q  159 tagttgg 165  Q
     ||||||    
T  17560895 aagttgg 17560901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 21855820 - 21855869
Alignment:
Q  462 acgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 511  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21855820 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 21855869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 39379080 - 39379271
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| |||||||| |||||| |||||||||| || ||||||||   |||   |||||||||||||||| ||| | |||| |||||    
T  39379080 tgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaataagaaaaacaaagacagtcacccaacacac 39379179  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
     || | ||||| |  ||| ||| || ||||||||||| || |||| |   || || |||||||| |||||||||||||| || |||| ||||    
T  39379180 caaaacttggctctgcagacggaacctcatcaaaaccccaaggcaaccgatactggttgtatgtttcagtccccaaatcaagtgaaacaata 39379271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 21855711 - 21855786
Alignment:
Q  362 taacgaaaaggaacaacaggaaaactttcgatatttctccaaacatcacgaccacccaagttgagaactctcacctctg 440  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||   | |||||| ||||| ||||||||||||||    
T  21855711 taacaaaaaggaataacaggaaaactttcgatgtttctccaaacatc---atcacccatgttgataactctcacctctg 21855786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 716
Target Start/End: Complemental strand, 4570741 - 4570665
Alignment:
Q  640 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacat 716  Q
    |||||| | ||| ||||||||| ||||| ||| |||| ||||||||  ||||||||||||||| |||||||||||||    
T  4570741 ccagttcacagtgccactcaaatacacaggtttgtggccaagaacagtaggaaaactttcaatatttctccaaacat 4570665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 4016998 - 4017039
Alignment:
Q  294 tgttgttgtgaagagccaaccagttgagagtgccactcaaat 335  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  4016998 tgttgttgtgaatagccaaccagttcagagtgccactcaaat 4017039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 4017168 - 4017216
Alignment:
Q  464 gccaccactttataagttccggttgaattatcgcatccaaaggcaaagc 512  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||||    
T  4017168 gccaccactttataagttgcagttgaattatcacatccaaatgcaaagc 4017216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 10218658 - 10218605
Alignment:
Q  458 cagaacgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 511  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||| ||||||    
T  10218658 cagaacgccaccactttaaagcttccggttgaattaacacatccaaatgcaaag 10218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 24330918 - 24331104
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||||||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||  ||||| ||||||||||| ||||| | ||  ||||    
T  24330918 tgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaagacagcccctcaatacac 24331017  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaa 242  Q
     |||||||||| | |  ||||| |||||||||||||||   |||||  ||||||||||||||||||| ||| ||||||| |||||||    
T  24331018 caatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaa 24331104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 24331336 - 24331385
Alignment:
Q  462 acgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 511  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24331336 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 24331385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 24331227 - 24331302
Alignment:
Q  362 taacgaaaaggaacaacaggaaaactttcgatatttctccaaacatcacgaccacccaagttgagaactctcacctctg 440  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||   | |||||| ||||| ||||||||||||||    
T  24331227 taacaaaaaggaataacaggaaaactttcgatgtttctccaaacatc---atcacccatgttgataactctcacctctg 24331302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 18964849 - 18964894
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataa 101  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||    
T  18964849 tgagtccaagagtcttcaactccaaattccttcatttgccatataa 18964894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 3625785 - 3625581
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||  ||| ||||||  ||||||||||||||||||||| | |||| |||||    
T  3625785 tgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttaccttgtaagaataagaaaaacaaaggcagtcccccaacacac 3625686  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattg 255  Q
     || | ||||  |   ||| || || | |||||| ||||  |||| |   || |||||||||||||||||||||||||| || |||| ||||  ||||||    
T  3625685 caacatttggttctataggaggcaccttatcaaatccacgaggcagccaatagtgattgtatgtctcagtccccaaatcaagtgaaacaataacaaattg 3625586  T
Q  256 ttcaa 260  Q
     ||||    
T  3625585 ctcaa 3625581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 29922012 - 29922111
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    |||| |||||||||||||  ||||||||||||||| ||||||||||||| ||||||||| ||||  | ||||||||||||||||||||| |||| |||||    
T  29922012 tgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttctttgtaagcataagaaaaacaaaggcagccccccaacacac 29922111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 29867287 - 29867191
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||    ||||||||||||||||||||| | |||| |||||    
T  29867287 tgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcctt---agaataagaaaaacaaaggcagtcccccaacacac 29867191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 29874561 - 29874480
Alignment:
Q  57 gagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaag 138  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||   ||||||||||||||||    
T  29874561 gagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttccttgtaacaataagaaaaacaaag 29874480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 29454122 - 29454313
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    |||||||||||||||||||  ||||||||| ||||  |||||||||||| ||| | ||||||||  |||||||||||||||||||  || ||||  ||||    
T  29454122 tgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaagaataagaaaaacaaaggcttccccccaaaacac 29454221  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
     ||  ||||| || ||||| || || ||||||||| |||  ||||    ||| | |||||| ||||||||||||||||| || |||| ||||    
T  29454222 caaccgttggagcttcaggtggcacctcatcaaaatcacgaggcaattggtacttattgtacgtctcagtccccaaatcaagtgaaataata 29454313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 59 - 258
Target Start/End: Complemental strand, 29859502 - 29859303
Alignment:
Q  59 gtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacactaa 158  Q
    ||||||||||||||||  |||||||||||||| | ||||||||| | |||| |||||||||   ||||||||||||||||   | | |||| ||||| ||    
T  29859502 gtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaataagaaaaacaaagatggtcccccaacacaccaa 29859403  T
Q  159 tagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattgttc 258  Q
    |||||||     ||||||| || |||||||| ||||  ||||    ||||||||||||||| ||| |||||||||| || |||| ||||  |||||||||    
T  29859402 tagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaagtgaaacaataacaaattgttc 29859303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 29881307 - 29881221
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcag 142  Q
    ||||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||||||   ||||| |||| |||||||||    
T  29881307 tgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttccttgtaacaataacaaaagcaaaggcag 29881221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 29885271 - 29885108
Alignment:
Q  84 tcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacactaatagttggcgcgtcaggcggtacttc 183  Q
    ||||||| ||||||||||||| |||||||||||||    |||||||||||||||||||||| || ||||||| ||  |||||| |  ||| ||| |||||    
T  29885271 tcttcatctgccatataacaaaatcagtttccttggaaaaataagaaaaacaaaggcagccccctagcacaccaaatgttggctccacagacggcacttc 29885172  T
Q  184 atcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
    |||||| |||   |||| | |||| || || |||||||| ||| ||||||| || |||| ||||    
T  29885171 atcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaata 29885108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 29445675 - 29445777
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| ||| |||| |||||| |||||||||| || ||| ||||||||||   |||||||| |||||||| |||| |||| |||||    
T  29445675 tgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagccccccaacacac 29445774  T
Q  156 taa 158  Q
    |||    
T  29445775 taa 29445777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 29920067 - 29920266
Alignment:
Q  61 ccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacactaata 160  Q
    |||||||| |||||  || ||||||||||| | |||||| | ||  || ||||||||||  ||||||||| || ||||||||||||||| ||||| || |    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaaga 29920166  T
Q  161 gttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattgttcaa 260  Q
    |||||  |  || | || ||||||||||| |||| |||||     || |||| ||| ||||| |||||||||| |||||||| ||||  |||||||||||    
T  29920167 gttggttctacaagtggcacttcatcaaatccacggggcagtaaatactgatggtaggtctctgtccccaaatggagagaaacaataacaaattgttcaa 29920266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 340
Target Start/End: Complemental strand, 29106865 - 29106581
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatca------gtttccttgtgtgaataagaaaaacaaaggcagcctccca 149  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||| ||||| ||||      ||||    || | |||||||||||||||||||||| ||||    
T  29106865 tgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatcaaaatctgtttttacgtataaataagaaaaacaaaggcagcccccca 29106766  T
Q  150 gcacactaatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaatagt 249  Q
     ||||| ||  ||||||   |  | ||| ||||||||||| ||||  |||| | |||||||||||||||||||  ||| | |||| || |||| ||||      
T  29106765 acacaccaactgttggccgttttgacggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctccaatcaagtgaaacaataac 29106666  T
Q  250 aaattgttcaatggtagtttccttaaagttataaaaaagattattgttgttgtgaagagccaaccagttgagagtgccactcaaatacaca 340  Q
    ||||||  |||  ||| | |||| ||| ||||||   ||  ||||||      ||| |||||||||||| |||||||||||||||||||||    
T  29106665 aaattgaccaactgtaatatcctcaaaattataatcgaggctattgt------gaatagccaaccagttaagagtgccactcaaatacaca 29106581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29899425 - 29899372
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatca 109  Q
    |||||||| || ||||||| ||||||||||||||| ||||||||||||| ||||    
T  29899425 tgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatca 29899372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 29895516 - 29895415
Alignment:
Q  60 tccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgt---gtgaataagaaaaacaaaggcagcctcccagcacact 156  Q
    ||||||| ||||| ||||||||||||||||| ||||||| |||||  ||  |||||||||     ||||||||||||||||| ||||| ||||  |||||    
T  29895516 tccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacagccacccaagacact 29895417  T
Q  157 aa 158  Q
    ||    
T  29895416 aa 29895415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 14076729 - 14076683
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataac 102  Q
    ||||||||||| |||||||  ||||||| ||||||||||||||||||    
T  14076729 tgagtccaagagtcttcaactccaaattccttcatttgccatataac 14076683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 14386757 - 14386711
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataac 102  Q
    ||||||||||| |||||||  ||||||| ||||||||||||||||||    
T  14386757 tgagtccaagagtcttcaactccaaattccttcatttgccatataac 14386711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 29881157 - 29881103
Alignment:
Q  206 tattgattgtatgtctcagtccccaaatcgagagaaagaatagtaaattgttcaa 260  Q
    ||||||||||||||||||||||||||||| || |||| ||||  |||||| ||||    
T  29881157 tattgattgtatgtctcagtccccaaatcaagtgaaacaataacaaattggtcaa 29881103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 22063693 - 22063636
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagttt 113  Q
    ||||||||||| |||| ||  ||||||| |||||||||||||||||||| || |||||    
T  22063693 tgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 22100544 - 22100499
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataa 101  Q
    ||||||||||| |||| ||  |||||||||||||||||||||||||    
T  22100544 tgagtccaagactcttgaactccaaatttcttcatttgccatataa 22100499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 3557777 - 3557586
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| |||||||| |||||| |||||||||| || ||| ||||||||||  ||||||||||||||||| ||| | | || |||||    
T  3557777 tgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaataagaaaaacaaagacagtccctcaacacac 3557678  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
     ||  |||||| | |||| ||| |  ||||||||||| |  |||| |   ||||| ||||||| ||||||||||||||| || |||| ||||    
T  3557677 caacggttggctcctcagtcggcatctcatcaaaaccccgaggcaaccgatattggttgtatgactcagtccccaaatcaagtgaaacaata 3557586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 3560977 - 3561168
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||| |||| || ||| ||||||||||  ||||||||||||||||||||  | ||||  ||||    
T  3560977 tgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaaaggcaatcccccaagacac 3561076  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaaccacagggcatcgtgtattgattgtatgtctcagtccccaaatcgagagaaagaata 247  Q
     || | | ||| |  |||||||||| | ||||||||| |  |||| |   |||||||||||||||||||| |||| ||| || |||| ||||    
T  3561077 caagattaggctctgcaggcggtaccttatcaaaaccccgaggcaacaaatattgattgtatgtctcagttcccagatcaagcgaaacaata 3561168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 3565795 - 3565659
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttccttgtgtgaataagaaaaacaaaggcagcctcccagcacac 155  Q
    ||||||||||| ||||||| |||||||| |||||| |||||||||| || ||| |||| ||| |   |||||||||||||||||||| | | || |||||    
T  3565795 tgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaaaggcagtccctcaacacac 3565696  T
Q  156 taatagttggcgcgtcaggcggtacttcatcaaaacc 192  Q
     || ||||||| | |||| ||| || |||||||||||    
T  3565695 caacagttggctcctcagtcggaacctcatcaaaacc 3565659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 53774891 - 53774833
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagtttc 114  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||||| || ||||||    
T  53774891 tgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttc 53774833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 3561304 - 3561346
Alignment:
Q  365 cgaaaaggaacaacaggaaaactttcgatatttctccaaacat 407  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  3561304 cgaagaggaacaataggaaaactttcaatatttctccaaacat 3561346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 11971001 - 11971058
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataacaagatcagttt 113  Q
    ||||||||||| ||||| |  ||||||| |||||||||||||||||||| || |||||    
T  11971001 tgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 4688 - 4733
Alignment:
Q  56 tgagtccaagaatcttcaatcccaaatttcttcatttgccatataa 101  Q
    ||||||||||| |||| ||  |||||||||||||||||||||||||    
T  4688 tgagtccaagactcttgaactccaaatttcttcatttgccatataa 4733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 20770689 - 20770644
Alignment:
Q  68 tcttcaatcccaaatttcttcatttgccatataacaagatcagttt 113  Q
    |||||||| ||||||| |||||||||||||||||||| || |||||    
T  20770689 tcttcaattccaaattccttcatttgccatataacaaaataagttt 20770644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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