View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-8 (Length: 669)
Name: NF4837-Insertion-8
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 43 - 669
Target Start/End: Original strand, 9470167 - 9470806
Alignment:
| Q |
43 |
gaaagcaagtatttgtgttccatttatgatatgttgtggttggtgcattggttcatcttagcgcttcttaaatattctatttttgttgatgtttgagttg |
142 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9470167 |
gaaagcaagtgtttgtgttccatttatgatatgttgtggttggtgcattggttcatcttagcgcttcttaagtattctatttttgttgatgtttgagttg |
9470266 |
T |
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| Q |
143 |
gtgttatgttgcagaattttgcagtttagttttggcttatcagtactactgtgattagcttcttacttttcatt-------------actgaaacattgt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
9470267 |
gtgttatgttgcagaattttgcagtttagttttggcttatcagtactactgcgattagcttcttacttttcattttaaattttcattactgaaacattgt |
9470366 |
T |
|
| Q |
230 |
gaattgagatatgctactaaaatggttggnnnnnnnaatctttttgaagggtctgagttatctgcacgcagtcagatatttagttcacagagacataaag |
329 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470367 |
gaattgagatatgctactaaaatggttggtttttttaatctttttgaagggtctgagttatctgcacgcagtcagatatttagttcacagagacataaag |
9470466 |
T |
|
| Q |
330 |
cctgctaatttacttgtaaatctcaaaggggagccgaaaattattgattttgttattagtgttggcttagaaaattcagttgcaatggttagtatatact |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470467 |
cctgctaatttacttgtaaatctcaaaggggagccgaaaattattgattttgttattagtgttggcttagaaaattcagttgcaatggttagtatatact |
9470566 |
T |
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| Q |
430 |
ctatcattcacagaattgaaattgcacttagggaaaattactgatttctatctatctatctatacacattcacgaaatggccttgaaaacttgttgctat |
529 |
Q |
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| T |
9470567 |
ctatcattcatagaattgaaattgcacttagggaaaattactgatttctatctatctatctatacacattcacgaaatggccttgaaaacttgttgctat |
9470666 |
T |
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| Q |
530 |
gtacataactaaacttgttgctgacctgagattcatatgaattagatatagtataatgctactgtactgtgaatgatatttttggttgttcccgtatttg |
629 |
Q |
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| T |
9470667 |
gtacataactaaacttgttgctgacctgagattcatatgaattagatatagtataatgctactgtactgtgaatgatatttttggttgttcccgtatttg |
9470766 |
T |
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| Q |
630 |
tacgggcgaattccatttgtatgtgatgttattagcttta |
669 |
Q |
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| T |
9470767 |
tacgggcgaattcaatttgtatgtgatgttattagcttta |
9470806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 226 - 442
Target Start/End: Original strand, 40375475 - 40375691
Alignment:
| Q |
226 |
ttgtgaattgagatatgctactaaaatggttggnnnnnnnaatctttttgaagggtctgagttatctgcacgcagtcagatatttagttcacagagacat |
325 |
Q |
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| T |
40375475 |
ttgtgaattgagatatgctactaacttggttggtttttttaatctttttgaagggtctaagttatctgcacggagtcagatatttagttcacagagacat |
40375574 |
T |
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| Q |
326 |
aaagcctgctaatttacttgtaaatctcaaaggggagccgaaaattattgattttgttattagtgttggcttagaaaattcagttgcaatggttagtata |
425 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||| | | |||||| |||||||||| ||||||||||||| |
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| T |
40375575 |
aaagcctgctaatttacttgtaaatctcaaaggggagacggaaattactgattttggtattacttctttcttagagaattcagttgtaatggttagtata |
40375674 |
T |
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| Q |
426 |
tactctatcattcacag |
442 |
Q |
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| T |
40375675 |
tactctatcagtcacag |
40375691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 2530943 - 2531101
Alignment:
| Q |
43 |
gaaagcaagtatttgtgttccatttatgatatgttgtggttggtgcattggttcatcttagcgcttcttaaatattctatttttgtt-gatgtttgagtt |
141 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
2530943 |
gaaagcaagtatttgtgttccatttatgctatgttgtggttggtgcattggttcatcttagcgcttcttgaatattctatttttgttagatgtctgagtt |
2531042 |
T |
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| Q |
142 |
ggtgttatgttgcagaattttgcagtttagttttggcttatcagtactactgtgattag |
200 |
Q |
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| T |
2531043 |
ggtgttatgttgcagaattttgcagttcagttttgtcttatcagtactactgtgattag |
2531101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 266 - 435
Target Start/End: Complemental strand, 653739 - 653570
Alignment:
| Q |
266 |
aatctttttgaagggtctgagttatctgcacgcagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagccg |
365 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
653739 |
aatctttttgaagggtctaagttatctgcacggagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaagggggagcca |
653640 |
T |
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| Q |
366 |
aaaattattgattttgttattagtgttggcttagaaaattcagttgcaatggttagtatatactctatca |
435 |
Q |
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| T |
653639 |
aaaattaccgattttggtattagtgctggcttagagaattcagttgcaatggttagtatatactcaatca |
653570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 653806 - 653758
Alignment:
| Q |
202 |
ttcttacttttcattactgaaa-cattgtgaattgagatatgctactaa |
249 |
Q |
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| T |
653806 |
ttcttacttttcattattgaaaacattgtgaattgagacatgctactaa |
653758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 39020 - 38864
Alignment:
| Q |
43 |
gaaagcaagtatttgtgttccatttatgatatgttgtggttggtgcattggttcatcttagcgcttcttaaatattctatttttgtt-gatgtttgagtt |
141 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||| |||||| |
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| T |
39020 |
gaaagcaagtatttgtgttccatttatgctatgttgtggttggtgcatcggttcatcttagcgcttcttgagtattctatttttgttagatgtctgagtt |
38921 |
T |
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| Q |
142 |
ggtgttatgttgcagaattttgcagtttagttttggcttatcagtactactgtgattag |
200 |
Q |
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| T |
38920 |
ggtgttatgttgcagaatgttgcagtt--cttttggcttatcagtactactgtgattag |
38864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 550 - 659
Target Start/End: Original strand, 53692821 - 53692925
Alignment:
| Q |
550 |
ctgacctgagattcatatgaattagatatagtataatgctactgtactgtgaatgatatttttggttgttcccgtatttgtacgggcgaattccatttgt |
649 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||| ||||||||| |||||| |
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| T |
53692821 |
ctgacctgagattcttatgaattagatatagtataatgctactgt-----gaaggattcttttggttgttcctgtatttgtacaggcgaattcaatttgt |
53692915 |
T |
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| Q |
650 |
atgtgatgtt |
659 |
Q |
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||||||||| |
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| T |
53692916 |
gtgtgatgtt |
53692925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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