View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837-Insertion-9 (Length: 618)
Name: NF4837-Insertion-9
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 329 - 618
Target Start/End: Complemental strand, 34894305 - 34894018
Alignment:
| Q |
329 |
agatatttaaaatgagatagtttttgttgttatactatattatgagatggaaggagtaaatagttaactataatgtagcttgctagctgaagggacacta |
428 |
Q |
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| T |
34894305 |
agatatttaaaatgagatagtttttgttgttatactataatatgagatgaaaggagtaaatagttaactataatgtagcttgctagctgaagggacacta |
34894206 |
T |
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| Q |
429 |
tatattattgcaattactccctcactgcttttgaagttaaggcttttgtgatcaatcaatatgatgctaatttgttagttagaagtctattttaattttc |
528 |
Q |
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| T |
34894205 |
tatattattgcaattactccctcactgcttttgaagttaaggcttttgtgatcaatcaatatgatgctaatttgttagttagaagtctattttaattttc |
34894106 |
T |
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| Q |
529 |
cttttaagaaagttattgccttacatatcattcatgaagctaatttgagcaataaccaattatagccagacaatatttcaactcttgcag |
618 |
Q |
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| T |
34894105 |
cttttaagaaagttattgccttac--atcattcatgaagctaatttgagcaataaccatttatagccagacaatatttcaactcttgcag |
34894018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 172 - 335
Target Start/End: Complemental strand, 34894534 - 34894368
Alignment:
| Q |
172 |
ggaagaacattatgaatgaggcctatgtatatata---acattataatttgttttaagattttaacacatgaattaagaaatgtgattaatattttaggt |
268 |
Q |
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| T |
34894534 |
ggaagaacattatgaatgaggcctatgtatatatacattaattataatttgttttaagattttaacacatgaattaagaaatgtgattaatattttaggt |
34894435 |
T |
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| Q |
269 |
ttcatacaaaatattgtataattttctacactttcatattagttagaagagttgaagaggagatatt |
335 |
Q |
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| T |
34894434 |
ttcatacaaaatattgtataattttctacactttcatattagttagaagagttgaagatgggatatt |
34894368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 34894698 - 34894579
Alignment:
| Q |
8 |
gaattcaccctgcttggcttttggcttttcgagtttttgcgtttattgtgcttttggttctactcattgtcaatgttgttgttgatggaggagaaatttt |
107 |
Q |
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| T |
34894698 |
gaattcaccctgcttggcttttggcttttcgagtttttgcgtttattgtgcttttggttctactcattgtcaatgttgttgttgatggaggagaaatttt |
34894599 |
T |
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| Q |
108 |
attgtactacactcagtaag |
127 |
Q |
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| T |
34894598 |
attgtactacactcagtaag |
34894579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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