View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837_low_1 (Length: 566)
Name: NF4837_low_1
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 10946284 - 10946821
Alignment:
| Q |
12 |
tattctaacagagaattcactgactttcttgggtctagcactaaatgcatcaatgaagctgctcatgataatatcatagaaaccgcaatggaaagcgaaa |
111 |
Q |
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| T |
10946284 |
tattctaacagagaattcactgactttcttgggtctagcactaaatgcatcaatgaagctgctcataataatatcatagaaaccgcaatggaaagcgaaa |
10946383 |
T |
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| Q |
112 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgatcaaatcaagggtcctaatttatcttctttaattttc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10946384 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgatcaaatcaagggtcctaatttaccttctttaattttc |
10946483 |
T |
|
| Q |
212 |
cactttcagcctacaacacggggtattaaaaattgaaagcctcccttttcatattaaaaattgaaggtggttttgccttttccataacctcctatgtttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10946484 |
cactttcagcctacaacacggggtattaaaaattgaaagcctcccttttcatattaaaaattgaaggtggttttgccttttccataacctcctgtgtttt |
10946583 |
T |
|
| Q |
312 |
gggatgaaagtggaaaattagagaaaatgaatctggatccttaatttgatcggatggcaatacattatttgaattgtgactgcattatttttctgacttc |
411 |
Q |
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| T |
10946584 |
gggatgaaagtggaaaattagagaaaatgaatctggacccttaatttgatcggatggcaatacattatttgaattgtgactgcgttatttttctgacttc |
10946683 |
T |
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| Q |
412 |
agtgaatcacggtccatggaaagcattgacaaatgtttattatacacttcggtttctcatcaaagtcgcataaaattagatttacacaatcagcatcaac |
511 |
Q |
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| T |
10946684 |
agtgaatcacggtccatggaaagcattgacagatgtttattatacacttcggtttctcatcaaagtcgcataaaattagatttacacaatcagcatcaac |
10946783 |
T |
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| Q |
512 |
aaaacagtcctctgcaatagacaagagaataaaagagt |
549 |
Q |
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| T |
10946784 |
aaaacagtcctctgcaatatacaagagaataaaagagt |
10946821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 10938057 - 10938151
Alignment:
| Q |
10 |
attattctaacagagaattcactgacttt-cttgggtctagcactaaatgcatcaatgaagctgctcatgataatatcatagaaaccgcaatgga |
103 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||| |
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| T |
10938057 |
attattctaacagagaatttgctgacttttcttgggtctagcactaaatgcatcaatgaagctgctcataataaaatcctgaaaaccgcaatgga |
10938151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 549
Target Start/End: Original strand, 10938154 - 10938266
Alignment:
| Q |
434 |
gcattgacaaatgtttattatacacttcggtttctcatcaaagtcgcataaaattagatttacacaatcagcatcaacaaaacagtcctctgcaatagac |
533 |
Q |
| |
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|||| ||||| ||||||| | ||||| |||| |||||||||| ||||||| || | |||||||||| |||||||| || ||||| ||| |||||||| |
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| T |
10938154 |
gcatcgacaagtgtttatcacacactgcggtctctcatcaaattcgcatacaagtg---ttacacaatcggcatcaactaagcagtcatcttcaatagac |
10938250 |
T |
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| Q |
534 |
aagagaataaaagagt |
549 |
Q |
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|||||| ||||||||| |
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| T |
10938251 |
aagagattaaaagagt |
10938266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 549
Target Start/End: Original strand, 10926175 - 10926231
Alignment:
| Q |
493 |
ttacacaatcagcatcaacaaaacagtcctctgcaatagacaagagaataaaagagt |
549 |
Q |
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||||||||||||||||||| || |||| | ||| |||||||||| |||||||||||| |
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| T |
10926175 |
ttacacaatcagcatcaactaagcagtaccctgaaatagacaagggaataaaagagt |
10926231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 45973998 - 45973935
Alignment:
| Q |
112 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgat |
175 |
Q |
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|||||||||||||| ||| |||||| || |||||||||| |||||| | ||| ||||||||||| |
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| T |
45973998 |
tgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacataaccatctgat |
45973935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 29175841 - 29175909
Alignment:
| Q |
112 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgatcaaat |
180 |
Q |
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| T |
29175841 |
tgtgactcactgcagtcagtaaaatgacacagtcacacattcaaacaaaacataaccatctgatcaaat |
29175909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 53138874 - 53138942
Alignment:
| Q |
112 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgatcaaat |
180 |
Q |
| |
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|||||||||||||| |||| ||| ||||||||||||||||| ||| || ||| | ||||| |||||||| |
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| T |
53138874 |
tgtgattcactgcactcataaaattgacgcagtcacacagtcaaagaaaacagagccatccgatcaaat |
53138942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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