View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4837_low_2 (Length: 353)
Name: NF4837_low_2
Description: NF4837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4837_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 55505890 - 55505569
Alignment:
| Q |
15 |
tctctacaagaaagatcaaagatggaacggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacatgat |
114 |
Q |
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| T |
55505890 |
tctctacaagaaagatcaaagatggaacggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacatgat |
55505791 |
T |
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| Q |
115 |
tttaaaacccttgcactagaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggaga |
214 |
Q |
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| T |
55505790 |
tttaaaacccttgcactagaaatgatgaatccaagtacactagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggaga |
55505691 |
T |
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| Q |
215 |
ggatctgaaccctcataatttatggattatcattgcaattattatgagtttaaaccaacggaacataatatgtgtaagcatccatattgtaatatgtttg |
314 |
Q |
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| T |
55505690 |
ggatctgaaccctcataatttatggattatcattgcaattattatgagtttaaaccaacggaacataatatgtgtaagcatccatattgtaatatgtttg |
55505591 |
T |
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| Q |
315 |
atgcacattcaaaggacaaaag |
336 |
Q |
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| T |
55505590 |
atgcacattcaaaggacaaaag |
55505569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 43996037 - 43995858
Alignment:
| Q |
132 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatctgaaccctcata |
231 |
Q |
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| T |
43996037 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatccaaaccctcata |
43995938 |
T |
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| Q |
232 |
atttatggattatcattgcaattattatgagtttaaaccaacgg-aacataatatgtgtaagcatccatattgtaatatg |
310 |
Q |
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| T |
43995937 |
atctatggattatcaatgcaattattatgagtttaaaccaacggaaacataatatgtgtaggcatccatattgtaatatg |
43995858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 43633890 - 43633961
Alignment:
| Q |
132 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43633890 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
43633961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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