View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4838-Insertion-3 (Length: 678)
Name: NF4838-Insertion-3
Description: NF4838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4838-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 10094889 - 10095196
Alignment:
| Q |
7 |
agttagttgatatttgataactattcaaattcgcagaagattttatctagaaataatagaaaaccgatgtaactaagaactttagacttgaagaaatttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10094889 |
agttagttgatatttgataactattcaaattcgcagaagattttatctagaaataatagaaaaccgatgtaactaagaactttagacttgaagaaatttg |
10094988 |
T |
|
| Q |
107 |
tcaccactaagattttgaacatactcaaattgaaactattgtaaagtaaagagaattcaatcatcattttagctaaaattttattgttagctttggtcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10094989 |
tcaccactaagattttgaacatactcaaattgaaactattgtaaagtaaagagaattcaatcatcattttagataaaattttattgttagctttggtcaa |
10095088 |
T |
|
| Q |
207 |
aacattaatggacatggttgacaaaatgttcatcttaacataggaaagaacatcatatcgttccaaaaataattattatatttatagacatgtaaatact |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10095089 |
aacattaatggacatagttgacaaaatgttcatcttaacataggaaagaacatcatatcgttccaaaaataattattatatttatagacatgtaaatact |
10095188 |
T |
|
| Q |
307 |
agccggat |
314 |
Q |
| |
|
||| |||| |
|
|
| T |
10095189 |
agctggat |
10095196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 392 - 521
Target Start/End: Original strand, 10095226 - 10095355
Alignment:
| Q |
392 |
tcatatttatcaaatattctcaagacataactattctttaaacttatcttccacaaaacaaggatgaatttctacaaagttgaaaaattatatactcttg |
491 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10095226 |
tcatattgatcaaatattctcaagacataactattctttaaacttatcttccacaaaacaaagatgaatttctacaaagttgaaaaattatatactcttg |
10095325 |
T |
|
| Q |
492 |
taacatgatatatttattattactgctgtg |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10095326 |
taacatgatatatttattattactgctgtg |
10095355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 607
Target Start/End: Original strand, 10095391 - 10095443
Alignment:
| Q |
555 |
caattttgatgaaacctatgaccatgtttttgtgtttaacataggaagaatct |
607 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10095391 |
caattttgatgaaacctatgactatgtttatgtgtttaacataggaagaatct |
10095443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University