View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4838-Insertion-4 (Length: 675)
Name: NF4838-Insertion-4
Description: NF4838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4838-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 653
Target Start/End: Original strand, 1429474 - 1430114
Alignment:
| Q |
8 |
ttttaaggttgtaatgtggcttaggttaatgtgggatatgtttgaaaaaataggctaaaaattgaagttaatatatgatattattccttgtctattcgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1429474 |
ttttaaggttgtaatgtggcttaggttaatgtggtatatgtttgaaaaaataggctaaaaattgaagttaatatatgatattattccttgtctattcgtt |
1429573 |
T |
|
| Q |
108 |
aaacaaccaaccttcctactcatcaccaagacaacatgggtagtaaagaagtacttgtaatgtttcttttttaaagagaccagttatttacttttggct- |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1429574 |
aaacaaccaaccttcctactcatcaccaagacaacatgggtagtaaagaaatacttgtaatgtttcttttttaaagagaccagttatttacttttggctc |
1429673 |
T |
|
| Q |
207 |
-ttannnnnnnnnnnnnnnnngtctaaagtgatcttagatgga-taagtnnnnnnntattaatttattttgcaactatagaatatatttactcttccttc |
304 |
Q |
| |
|
|| ||||||| |||||||||||||| ||||| ||||||||| |||||||| |||| | |||||||||||||||||| |
|
|
| T |
1429674 |
ttttttttttcttttttttttgtctaaactgatcttagatggaataagtaaaaaaatattaatttcttttgcaattatatattatatttactcttccttc |
1429773 |
T |
|
| Q |
305 |
tttcattgtgttttttatcgatataagttctctttgttaaaggtaatcttattgaaacttgaattgattccactatgctgagcattttgcttatatataa |
404 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
1429774 |
tttcattgtgtttt-tatcgatataagttctctttgttaaaggtaatcttattcaaactttaattcattccactatgctcagcattttggttatatataa |
1429872 |
T |
|
| Q |
405 |
acgaaaacatactaaagtcaaattaaaagaaaaacgtgaggcgcatgggagctgcatgcatgccaaaaaagccccactaaataacaatagtaggtttggt |
504 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1429873 |
acgaaaacatactaaagtaaaattaaaagaaaaacgtgaggcgcatgggagctgcatgcatgccaaaaaag-cccactaaataacaatagtaggtttggt |
1429971 |
T |
|
| Q |
505 |
gcatttggtgtgtgcgcacgatagtcggtgtaccagtaatgtaggaagtttccacgaaattgccttaacatcttttacaacaa-taatattgactcaaga |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1429972 |
gcatttggtgtgtgcgcacgatagtcggtgtaccagtaatgtaggaagtttccacgaaattgccttaacatcttttacaacaacaaatattgactc---- |
1430067 |
T |
|
| Q |
604 |
aagatcccatcctcatcatcataatttctcttccactatacttcactctc |
653 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
1430068 |
aagatcctatcc---tcatcatagtttctcttccactatacttcactctc |
1430114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 34332476 - 34332434
Alignment:
| Q |
19 |
taatgtggcttaggttaatgtgggatatgtttgaaaaaatagg |
61 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
34332476 |
taatgtgacttaagttaatgtgggatatatttgaaaaaatagg |
34332434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University