View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4838-Insertion-5 (Length: 653)
Name: NF4838-Insertion-5
Description: NF4838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4838-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Complemental strand, 8407410 - 8406770
Alignment:
| Q |
7 |
ataactatctaagtggttttgattatacgatgttaatctaaatttaagatacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcat |
106 |
Q |
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| T |
8407410 |
ataactatctaagtggttttgattatacgatgttaatctaaatttaagacacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcat |
8407311 |
T |
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| Q |
107 |
cctaattaaaacagcattgtctaaaggcttgtctgatgcctcaccaccttccttcatccatggatgttctgtttcaacttaataatgtgagtcttggacc |
206 |
Q |
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| T |
8407310 |
cctaattaaaacagcattatctaaaggcttgtctgatgcctcaccaccttccttcatccatggatgttctgtttcaacttaataatgtgagtcttggacc |
8407211 |
T |
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| Q |
207 |
ttatcgatgataaaaattggtcaaaacaataataaataaaatacagctgatcatgctaggcatcaacacaacagttaatcaattttaattggtttctata |
306 |
Q |
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| T |
8407210 |
ttatcgatgataaaaattggtcaaaacaataatacataaaatacagctgatcatgctaggcatcaacacaacagttaatcaattttaattggtttctata |
8407111 |
T |
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| Q |
307 |
agtacttaccaagggcatcagaagctgtaatgcgtttcttagggtcataactcaacattttcctgatcaaatcttttgcagcaactgaaatagaaggcca |
406 |
Q |
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| T |
8407110 |
agtacttaccaagggcatcagaagctgtaatgcgtttcttagggtcataactcaacattttcctgatcaaatcttttgcagcaactgaaatagaaggcca |
8407011 |
T |
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| Q |
407 |
aggcgcactctccagatcaagcttaccttctaaaattacttgaaatatgcctttttcggtttctaaaaatgttcaacaaattaataatgtcactatctgt |
506 |
Q |
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| T |
8407010 |
aggtgcactctccagatcaagcttaccttctaaaattgcttgaaatatgcctttttcggtttctaaaaatgttcaaca----aataatgtcactatctgt |
8406915 |
T |
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| Q |
507 |
gtaaaccgaaacagaattataacattgtgtttatttatacttaccagcccaaaatggaggcaccccacttagggagaatatataaaatgattcctgcact |
606 |
Q |
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| T |
8406914 |
gtaaaccgaaacagaattataacattgtgtttatttatacttaccagcccaaaatggaggcaccccactta-ggagaatatataaaatgattcctgcact |
8406816 |
T |
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| Q |
607 |
ccatatatcaatctcctttccataactccgtttttaacacctctgga |
653 |
Q |
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| T |
8406815 |
ccatatatcaatctcctttccataactccg-ttttaacacctctgga |
8406770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 41620708 - 41620797
Alignment:
| Q |
56 |
tacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcatcctaattaaaacagcattgtctaaaggcttgtctgatgc |
145 |
Q |
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| T |
41620708 |
tacctttaaagctactttctttagcttgttcattgctcggaactgtttcattctgctcaaaacagcaatatcaagaggcttgtcagatgc |
41620797 |
T |
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