View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4838_low_2 (Length: 300)

Name: NF4838_low_2
Description: NF4838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4838_low_2
NF4838_low_2
[»] chr5 (9 HSPs)
chr5 (123-289)||(17392453-17392619)
chr5 (33-289)||(17383660-17383909)
chr5 (36-289)||(17377292-17377541)
chr5 (1-61)||(17392403-17392463)
chr5 (43-158)||(20111903-20112018)
chr5 (33-139)||(19806841-19806947)
chr5 (97-158)||(13712177-13712238)
chr5 (102-158)||(19653901-19653957)
chr5 (99-158)||(1347936-1347995)
[»] chr1 (1 HSPs)
chr1 (1-289)||(26052844-26053136)
[»] chr2 (1 HSPs)
chr2 (35-158)||(15784594-15784717)
[»] chr3 (4 HSPs)
chr3 (35-158)||(24890878-24891004)
chr3 (76-158)||(24912840-24912922)
chr3 (78-158)||(32226540-32226620)
chr3 (35-71)||(32242120-32242156)
[»] scaffold0009 (1 HSPs)
scaffold0009 (97-139)||(40602-40644)
[»] chr6 (1 HSPs)
chr6 (35-158)||(16258450-16258576)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 17392453 - 17392619
Alignment:
Q  123 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttctattctattaagtattttttacaaatcctattt 17392552  T
Q  223 tgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392553 tgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcat 17392619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 33 - 289
Target Start/End: Original strand, 17383660 - 17383909
Alignment:
Q  33 ccgtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttca 132  Q
    ||||| ||||||||||||  ||||||||||||  |||||   || |||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  17383660 ccgtgcttgaaaacttaagggaacttcaactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccatacttca 17383759  T
Q  133 aactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattttgtctcggat 232  Q
    |||||||| ||||  ||||||||||| ||||||||| ||||||||| |  |||||||| ||||||  |||| |||||||| |||||||||||||||||      
T  17383760 aactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctcttctatcgagta-tttttacatatcctattttgtctcgg-- 17383856  T
Q  233 tgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcat 289  Q
        ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  17383857 ----attgacaggcggagaattcagcaagcatagagcattgggaatatccagatcat 17383909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 289
Target Start/End: Original strand, 17377292 - 17377541
Alignment:
Q  36 tgtttgaaaacttaaccgaacttcaactattttggtctcgaggcatt------catgagtggcaggtggtagtgaaaatgctacagaattgtcccaaact 129  Q
    ||||||||||| |||||  ||||||||||| |||||||| | |||||      ||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  17377292 tgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgtcccaaact 17377391  T
Q  130 tcaaactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattttgtctcg 229  Q
    ||||||||||| ||||| ||||||||||| ||||||||| ||||||| | || |||||| | ||||||| |||| |||||||||||||||||||||||||    
T  17377392 tcaaactcttaccattgtaaaggtttgtttattatagttactaatttatacccgttcttatcttctattgagta-tttttacaaatcctattttgtctcg 17377490  T
Q  230 gattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcat 289  Q
    |      || |||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  17377491 g------atcgacaggcgaataattcaacaaccatag---attgggaatatccagatcat 17377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17392403 - 17392463
Alignment:
Q  1 tcttcccaataaagaaatcaattcatttgacaccgtgtttgaaaacttaaccgaacttcaa 61  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  17392403 tcttcccaataaagaaatcaattcatttgacacggtgtttgaaaacttaaccaaacttcaa 17392463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 20111903 - 20112018
Alignment:
Q  43 aaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaac 142  Q
    ||||||||| ||||||||||||| ||    ||| ||||||||||| |||   | ||||||||||||||| ||||| ||||||||||||||| | |||||     
T  20111903 aaacttaacagaacttcaactatattttcgtcgtggcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaa 20112002  T
Q  143 attgcaaaggtttgtt 158  Q
    |||| |||||||||||    
T  20112003 attgtaaaggtttgtt 20112018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19806841 - 19806947
Alignment:
Q  33 ccgtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttca 132  Q
    ||||||||||||||||||| || |||||||||| |||||     |||  |||||| ||| | | ||||||||||||||| || |||||||||||||| ||    
T  19806841 ccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactcca 19806940  T
Q  133 aactctt 139  Q
    |||||||    
T  19806941 aactctt 19806947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 13712238 - 13712177
Alignment:
Q  97 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 158  Q
    |||||||||||||||||| |  |||||||||||||||||||||   |||| |||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgtt 13712177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 19653957 - 19653901
Alignment:
Q  102 tgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 158  Q
    |||||||||||||  ||||||||||||||||| ||||||| |||  |||||||||||    
T  19653957 tgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgtt 19653901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 1347995 - 1347936
Alignment:
Q  99 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 158  Q
    |||||||||||||  |||||||||| ||||||||||||||   |||| ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtt 1347936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 26053136 - 26052844
Alignment:
Q  1 tcttcccaataaagaaatcaattcatttgaca---------ccgtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtgg 91  Q
    |||| |||||||||||||||||||||||||||         || ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||    
T  26053136 tctttccaataaagaaatcaattcatttgacaaaagccttcccatgtttgaaaacttaaccgaacttgaactattttggtctcaaggcattcatgactgg 26053037  T
Q  92 caggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgttcattatagttgct--aatttttgccagttcttc 189  Q
     |||| || ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||| | ||||||| ||  || |||  ||||||||||    
T  26053036 gaggtagtggtgaaaatgctacagaattgtcccaaacttcactctctttacattgcaaaggtttgtttaatatagttactaaaaatttcaccagttcttc 26052937  T
Q  190 tattctattaagtattttttacaaatcctattttgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcat 289  Q
    | ||||||| |||| ||||||||||||||||||||| ||||      ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  26052936 tcttctattgagta-tttttacaaatcctattttgtatcgg------attgacaggagaagtattcaacaaccatagagcattgggaatatccagatcat 26052844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 15784594 - 15784717
Alignment:
Q  35 gtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaa 134  Q
    ||||||| |||||||| |||||||||||||| ||||  ||  ||||||||||| |     | ||||||||||||||||||||||||||| |||||||||     
T  15784594 gtgtttggaaacttaatcgaacttcaactatgttggattcatggcattcatgactatgttgaggtagtgaaaatgctacagaattgtccaaaacttcaag 15784693  T
Q  135 ctcttaacattgcaaaggtttgtt 158  Q
    ||||||  |||| |||||| ||||    
T  15784694 ctcttagaattgaaaaggtctgtt 15784717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 24890878 - 24891004
Alignment:
Q  35 gtgtttgaaaacttaaccgaacttcaactattttggtctcgag---gcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttc 131  Q
    ||||||||||||||||||||||||||||| | || |  || ||   |||||||||| ||| | | || ||||||||||||  || |||||||||||||||    
T  24890878 gtgtttgaaaacttaaccgaacttcaactgtgttcggttcaagaatgcattcatgattgggacgaggcagtgaaaatgctttaggattgtcccaaacttc 24890977  T
Q  132 aaactcttaacattgcaaaggtttgtt 158  Q
    ||| ||| || |||  |||||||||||    
T  24890978 aaattctaaaaattcaaaaggtttgtt 24891004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 24912840 - 24912922
Alignment:
Q  76 aggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 158  Q
    |||||||||||| ||  | | |||||||||||||||  || |||||||||||||||||||||| || |||  |||||||||||    
T  24912840 aggcattcatgattgagatgaggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgtt 24912922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 32226540 - 32226620
Alignment:
Q  78 gcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 158  Q
    |||||||||| ||| | | ||||||| ||||||| ||  |||||||||||||||||||||||   ||| ||||||||||||    
T  32226540 gcattcatgattggtatgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 32242156 - 32242120
Alignment:
Q  35 gtgtttgaaaacttaaccgaacttcaactattttggt 71  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  32242156 gtgtttgaaaacttaactgaacttcgactattttggt 32242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 40602 - 40644
Alignment:
Q  97 ggtagtgaaaatgctacagaattgtcccaaacttcaaactctt 139  Q
    |||| |||||||||| ||||||||||| |||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctt 40644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 16258576 - 16258450
Alignment:
Q  35 gtgtttgaaaacttaaccgaacttcaactattttggtctcgag----gcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaactt 130  Q
    ||||||||||||||||  ||||||| ||||||||||| | ||     |||||||||| ||| | | ||||||| ||||||| || |||||||| ||||||    
T  16258576 gtgtttgaaaacttaattgaacttcgactattttggttt-gataattgcattcatgattggtatgaggtagtgcaaatgctccataattgtccgaaactt 16258478  T
Q  131 caaactcttaacattgcaaaggtttgtt 158  Q
    |||| ||||   ||| ||||||||||||    
T  16258477 caaagtctttcaatttcaaaggtttgtt 16258450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University