View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4838_low_3 (Length: 273)
Name: NF4838_low_3
Description: NF4838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4838_low_3 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 17393046 - 17392782
Alignment:
| Q |
9 |
attattctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcaaagatgaaagtatt |
108 |
Q |
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| T |
17393046 |
attatgctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcaaagatgaaagtatt |
17392947 |
T |
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| Q |
109 |
ggaagaccattgacttgaataagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaa |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17392946 |
ggaaaaccattgacttgaataagcctatattgttcaaaccatcaaattcagtagtagtgaatatcgaaactaacaaaaacaccaggtatacatctaggaa |
17392847 |
T |
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| Q |
209 |
ctgctgagattcagcttacatgtgggagacattcttggacaggaggataaattttctaaaaattg |
273 |
Q |
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| T |
17392846 |
ctgctgagattcagcttacatgtgggagacattcttggacaggaggataaattttctaaaaattg |
17392782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 262
Target Start/End: Complemental strand, 17377888 - 17377685
Alignment:
| Q |
58 |
tggctcatcacgaaaatt-gagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaaccatcaaatt |
156 |
Q |
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||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| |||| | ||| || |||||||||||||||| ||||||||||||| |
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| T |
17377888 |
tggctcatcgcgaaaatttgagctaacaaaacaatgcaaagaagaaagtattggcagactactgatttatataagcctatattgttaaaaccatcaaatt |
17377789 |
T |
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| Q |
157 |
cagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaactgctgagattcagcttacatgtgggagacattcttggacaggaggat |
256 |
Q |
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| T |
17377788 |
cagtagaagcaagtattgaaactaacgaaaacaccagacatacatctaggaactact--gaatcagcttacatgtgggagagatccttggacaggaggat |
17377691 |
T |
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| Q |
257 |
aaattt |
262 |
Q |
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|||||| |
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| T |
17377690 |
aaattt |
17377685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 273
Target Start/End: Complemental strand, 17384248 - 17384071
Alignment:
| Q |
106 |
attggaagaccattgacttgaataagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctag |
205 |
Q |
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| T |
17384248 |
attggtagaccattgatttgaataagcctatattgttcgaaccatcaaatccagtagtagtaaatattgtaagtaacaaaaatacccggtatacatctgg |
17384149 |
T |
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| Q |
206 |
gaactgctgagatt----------cagcttacatgtgggagacattcttggacaggaggataaattttctaaaaattg |
273 |
Q |
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| T |
17384148 |
gaactattgagattcaaacaatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattg |
17384071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 13711792 - 13711842
Alignment:
| Q |
223 |
cttacatgtgggagacattcttggacaggaggataaattttctaaaaattg |
273 |
Q |
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| T |
13711792 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattg |
13711842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 20049913 - 20049845
Alignment:
| Q |
129 |
aagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtat |
197 |
Q |
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| T |
20049913 |
aagcttatattgttcaaaccatcaaatctagtggtagcgtatataaaaacaaacaaaaacaccaggtat |
20049845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 26052508 - 26052732
Alignment:
| Q |
9 |
attattctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcaaagatgaaagtatt |
108 |
Q |
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||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26052508 |
attatgctcaatacaaaagtgtaaatccaatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcacagatgaaagtatt |
26052607 |
T |
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| Q |
109 |
ggaagaccattgacttgaataagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaa |
208 |
Q |
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| T |
26052608 |
ggcggaccattgattagtataaacctatattgttcaaaccatcaaattcagtagtagcaaatattgaaactaacaaaaacacaaag----catctaggaa |
26052703 |
T |
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| Q |
209 |
ctgctgagattcagcttacatgtgggaga |
237 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26052704 |
ctgctgagattcagcttacatgtgggaga |
26052732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 15785065 - 15785017
Alignment:
| Q |
220 |
cagcttacatgtgggagacattcttggacaggaggataaattttctaaa |
268 |
Q |
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| T |
15785065 |
cagcttacatgtgggagagatttttggacaggaggataagtcttctaaa |
15785017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 16257988 - 16258065
Alignment:
| Q |
132 |
cctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaact |
210 |
Q |
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| T |
16257988 |
cctatattgttcaaaccgaaaattccggtagcagtgtatatagaaactaacaaaaacaccaggtat-catctaggaact |
16258065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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