View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4839-Insertion-1 (Length: 991)
Name: NF4839-Insertion-1
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4839-Insertion-1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 628 - 991
Target Start/End: Original strand, 31008876 - 31009243
Alignment:
| Q |
628 |
tattttttaatctattctataatgaaaaattactcatttctaattttaagacaatgactaatcttatttcttataatagccctt-gttgtttttgagggg |
726 |
Q |
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| T |
31008876 |
tattttttaatctattctataatgaaaaattactcatttctaattttaagacaatgattaatcttattgcttataatagccctttgttgtttttgagggg |
31008975 |
T |
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| Q |
727 |
aatataataaccctttattatttacttactatattagcattttcaaaaccttaacttagatcacaccacatcctcttataattgccacaaacaaaacata |
826 |
Q |
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| T |
31008976 |
aatataataaccctttattatttacttactatattagcattttcaaaaccttaacttaggtcacaccacatcctcttataattgccacaaacaaaacata |
31009075 |
T |
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| Q |
827 |
acatacaaatatttacctcaatttggctccatctgcattttgttgttgcttcttctgc-atcaacaaccaatctccatctgcaggag-agcacac-acac |
923 |
Q |
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| T |
31009076 |
acatacaaatatttacctcaatttggctccatctgaattttgttgttgcttcttctgcaatcaacaatcaatctacatctgcagaagaagcacacaacac |
31009175 |
T |
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| Q |
924 |
-aaaatggggtatgtagaaacaacctcatcacaactacacacccctcttcttttctgaccaaccccctc |
991 |
Q |
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| T |
31009176 |
aaaaatggggtatgtagaaacaacctcatcacaactacacacccctcttc-tttctgaccaaccccctc |
31009243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 31008636 - 31008734
Alignment:
| Q |
119 |
atggttgtatctttatgtttgtcaatattttgttagttcatattttatgtgtttttaatttcatggaagttaaatgcatgttgttggcttcaaaagttt |
217 |
Q |
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| T |
31008636 |
atggttgtatctttatgtttgtcaatattttattagttcatattttatgtatttttaatttcatggaagttaaatgcatgttgttggcttcaaaagttt |
31008734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 31008808 - 31008849
Alignment:
| Q |
289 |
aatggcagtaagttctttcaacttcatatgtaaacagtttaa |
330 |
Q |
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| T |
31008808 |
aatggcagtaagtactttcaacttcatatgtaaacagtttaa |
31008849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 16674886 - 16674962
Alignment:
| Q |
397 |
actttgagttccactgtgagtattatagaacaccaccgccaaatttgtttcaaaggagtatttgcaaaacgttttaa |
473 |
Q |
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| T |
16674886 |
actttgaattccagtgtgagtattataaaacaccaacaccaaatttgttttaaaggagtaattgcaaaacgttttaa |
16674962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 17743573 - 17743490
Alignment:
| Q |
383 |
tttgacgcgccaaaactttgagttccactgtgagtattatagaacaccaccgccaaatttgtttcaaaggagtatttgcaaaac |
466 |
Q |
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| T |
17743573 |
tttgacgcgcccaatctttgaatttcagcgtgagtattattgaacactaacggcaaatttgttttaaaggagtaattacaaaac |
17743490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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