View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4839-Insertion-11 (Length: 299)

Name: NF4839-Insertion-11
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4839-Insertion-11
NF4839-Insertion-11
[»] chr4 (16 HSPs)
chr4 (11-299)||(7786419-7786707)
chr4 (11-299)||(7765597-7765885)
chr4 (218-299)||(7773643-7773724)
chr4 (115-177)||(7800693-7800755)
chr4 (218-299)||(7908499-7908580)
chr4 (115-184)||(49048508-49048577)
chr4 (19-75)||(7813467-7813523)
chr4 (19-75)||(7822956-7823012)
chr4 (116-175)||(7823026-7823085)
chr4 (115-175)||(37826938-37826998)
chr4 (116-184)||(45372004-45372072)
chr4 (115-162)||(7771457-7771504)
chr4 (115-162)||(7790142-7790189)
chr4 (22-60)||(37827035-37827073)
chr4 (116-177)||(7813537-7813598)
chr4 (267-299)||(48898954-48898986)
[»] chr8 (2 HSPs)
chr8 (21-79)||(12200299-12200357)
chr8 (21-79)||(12444727-12444785)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 7786419 - 7786707
Alignment:
Q  11 gcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattcttagttggtgttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786419 gcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattcttagttggtgttc 7786518  T
Q  111 ctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattatagagaaggagaagg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786519 ctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattatagagaaggagaagg 7786618  T
Q  211 ggtggtttttaatggggctattcattggttgtcttcgcgtcgtgatattgctttggatgtcattgttggctttgatttaacggaaagga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7786619 ggtggtttttaatggggctattcattggttgtcttcgcgtcgtgatatagctttggatgtcattgttggctttgatttaacggaaagga 7786707  T

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Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 7765597 - 7765885
Alignment:
Q  11 gcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattcttagttggtgttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  7765597 gcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctccgttggtgttc 7765696  T
Q  111 ctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattatagagaaggagaagg 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  7765697 ctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattatagagaaggagaagg 7765796  T
Q  211 ggtggtttttaatggggctattcattggttgtcttcgcgtcgtgatattgctttggatgtcattgttggctttgatttaacggaaagga 299  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  7765797 ggtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 7765885  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 7773724 - 7773643
Alignment:
Q  218 tttaatggggctattcattggttgtcttcgcgtcgtgatattgctttgg-atgtcattgttggctttgatttaacggaaagga 299  Q
    |||||||||||||||||||||||| ||| |||||||||| || | |||| |||| ||||||  ||||||||||| ||||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgat-ttacgttggaatgtaattgtttcctttgatttaatggaaagga 7773643  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 7800693 - 7800755
Alignment:
Q  115 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcactt 177  Q
    |||||||||||||||||||||||||  ||| ||||| ||||||||||| || |||||| ||||    
T  7800693 atcacatttggaggttttctcgtttccagataatacctggaaagaaattgacggtactaactt 7800755  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 7908499 - 7908580
Alignment:
Q  218 tttaatggggctattcattggttgtcttcgcgtcgtgatattgctttggatgtcattgttggctttgatttaacggaaagga 299  Q
    |||||||| | ||||||||||||| |||  ||||||||| | | ||||  ||||||||||| ||||||||||| ||||||||    
T  7908499 tttaatggtgttattcattggttggctttacgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaagga 7908580  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 49048577 - 49048508
Alignment:
Q  115 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttat 184  Q
    ||||||||||||| |||||||||| | ||| ||||  ||||||||||| |||||||||||| | ||||||    
T  49048577 atcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7813467 - 7813523
Alignment:
Q  19 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 75  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7813467 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7813523  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7822956 - 7823012
Alignment:
Q  19 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 75  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7822956 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7823012  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 7823026 - 7823085
Alignment:
Q  116 tcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 175  Q
    ||||||| ||||||||||||||||  ||| ||||| ||||||||||| || |||||||||    
T  7823026 tcacattnggaggttttctcgtttccagataatacctggaaagaaattgatggtactcac 7823085  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 37826998 - 37826938
Alignment:
Q  115 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 175  Q
    ||||||||||||| |||||||||| ||||| ||| | |||| |||||| ||||||||||||    
T  37826998 atcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcac 37826938  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 45372072 - 45372004
Alignment:
Q  116 tcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttat 184  Q
    |||||||||||| ||||||| || | ||| |||||||||| |||| | |||||||||||||| ||||||    
T  45372072 tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttcccttat 45372004  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 7771457 - 7771504
Alignment:
Q  115 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaat 162  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  7771457 atcacatttggaggttttctcatttagagataatacgtggaaagaaat 7771504  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 7790142 - 7790189
Alignment:
Q  115 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaat 162  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  7790142 atcacatttggaggttttctcatttagagataatacgtggaaagaaat 7790189  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 37827073 - 37827035
Alignment:
Q  22 tctatatggttttggttacgatcagtctagagatgatta 60  Q
    |||||||||||||||||| || |||||||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgatta 37827035  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 7813537 - 7813598
Alignment:
Q  116 tcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcactt 177  Q
    |||||||||||||||||||| |||  ||| ||||| ||||||||||| || |||||| ||||    
T  7813537 tcacatttggaggttttctcctttccagataatacctggaaagaaattgaaggtactaactt 7813598  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 48898954 - 48898986
Alignment:
Q  267 atgtcattgttggctttgatttaacggaaagga 299  Q
    |||||||||||| ||||||||||||||||||||    
T  48898954 atgtcattgttgcctttgatttaacggaaagga 48898986  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
Q  21 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 79  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
Q  21 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 79  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

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