View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4839-Insertion-3 (Length: 910)

Name: NF4839-Insertion-3
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4839-Insertion-3
NF4839-Insertion-3
[»] chr2 (15 HSPs)
chr2 (8-907)||(30991941-30992840)
chr2 (520-630)||(9730276-9730386)
chr2 (520-623)||(10057367-10057471)
chr2 (512-570)||(4816618-4816677)
chr2 (512-570)||(9716198-9716257)
chr2 (444-493)||(35730854-35730903)
chr2 (520-572)||(40629308-40629361)
chr2 (523-630)||(13560094-13560202)
chr2 (520-575)||(27023488-27023544)
chr2 (520-556)||(31514941-31514977)
chr2 (516-579)||(39232475-39232538)
chr2 (338-392)||(34825576-34825630)
chr2 (523-575)||(27081347-27081400)
chr2 (453-494)||(34825479-34825520)
chr2 (449-494)||(44253054-44253099)
[»] chr3 (11 HSPs)
chr3 (519-623)||(29717460-29717565)
chr3 (516-630)||(21523673-21523788)
chr3 (512-630)||(9503954-9504074)
chr3 (427-494)||(34008376-34008443)
chr3 (520-599)||(29563538-29563618)
chr3 (520-602)||(27048705-27048788)
chr3 (520-569)||(33458545-33458595)
chr3 (523-569)||(52426440-52426487)
chr3 (423-497)||(11836879-11836953)
chr3 (520-570)||(20601729-20601781)
chr3 (557-630)||(34008288-34008361)
[»] chr4 (12 HSPs)
chr4 (424-498)||(39722025-39722099)
chr4 (520-594)||(6892918-6892993)
chr4 (423-494)||(26660187-26660258)
chr4 (520-569)||(4576605-4576655)
chr4 (518-602)||(56092300-56092385)
chr4 (455-498)||(4576653-4576696)
chr4 (523-569)||(6828958-6829004)
chr4 (424-498)||(11432422-11432496)
chr4 (520-599)||(32519866-32519947)
chr4 (523-552)||(12154228-12154257)
chr4 (523-552)||(26660263-26660292)
chr4 (523-579)||(36706400-36706457)
[»] chr8 (26 HSPs)
chr8 (512-579)||(25107303-25107371)
chr8 (512-630)||(2374412-2374531)
chr8 (520-630)||(2510600-2510711)
chr8 (520-630)||(255054-255165)
chr8 (520-630)||(660755-660866)
chr8 (520-630)||(846491-846602)
chr8 (511-570)||(9552656-9552716)
chr8 (512-630)||(10812023-10812143)
chr8 (520-630)||(16998092-16998204)
chr8 (520-599)||(31587819-31587899)
chr8 (520-599)||(40691302-40691382)
chr8 (520-594)||(2620085-2620160)
chr8 (520-569)||(9617434-9617484)
chr8 (520-630)||(39139483-39139595)
chr8 (512-552)||(3457842-3457882)
chr8 (520-552)||(22738737-22738769)
chr8 (520-630)||(2062500-2062610)
chr8 (521-579)||(12942299-12942358)
chr8 (520-630)||(44652425-44652535)
chr8 (438-497)||(45322399-45322458)
chr8 (520-569)||(10710036-10710086)
chr8 (424-498)||(30469438-30469512)
chr8 (520-569)||(39628732-39628782)
chr8 (520-569)||(39638282-39638332)
chr8 (521-550)||(34405844-34405873)
chr8 (523-579)||(35458921-35458978)
[»] chr7 (18 HSPs)
chr7 (520-630)||(18330653-18330764)
chr7 (520-630)||(25685432-25685543)
chr7 (520-630)||(42672899-42673010)
chr7 (424-494)||(10577623-10577693)
chr7 (424-498)||(18793709-18793783)
chr7 (523-605)||(25072828-25072910)
chr7 (520-599)||(39727376-39727456)
chr7 (512-570)||(18879585-18879644)
chr7 (444-495)||(41759017-41759068)
chr7 (517-571)||(37849302-37849356)
chr7 (520-569)||(9479425-9479474)
chr7 (520-599)||(32420492-32420572)
chr7 (516-605)||(43337008-43337095)
chr7 (520-570)||(41937691-41937742)
chr7 (520-554)||(32684370-32684404)
chr7 (518-630)||(28248863-28248976)
chr7 (512-545)||(40727094-40727127)
chr7 (520-604)||(42766481-42766566)
[»] chr6 (6 HSPs)
chr6 (520-622)||(6228018-6228120)
chr6 (516-560)||(26244233-26244277)
chr6 (516-570)||(24556546-24556601)
chr6 (522-605)||(33599316-33599400)
chr6 (520-630)||(8351093-8351206)
chr6 (520-569)||(33248198-33248248)
[»] scaffold0330 (1 HSPs)
scaffold0330 (520-594)||(10864-10938)
[»] chr5 (17 HSPs)
chr5 (512-570)||(14830725-14830784)
chr5 (520-602)||(32906958-32907041)
chr5 (423-497)||(22859640-22859714)
chr5 (528-630)||(41873077-41873182)
chr5 (523-579)||(36440056-36440113)
chr5 (512-552)||(16885580-16885620)
chr5 (520-552)||(40514906-40514938)
chr5 (521-552)||(8570179-8570210)
chr5 (434-489)||(9190082-9190137)
chr5 (455-498)||(38876722-38876765)
chr5 (330-380)||(8570324-8570374)
chr5 (455-497)||(15577928-15577970)
chr5 (520-569)||(19297997-19298047)
chr5 (520-558)||(40201776-40201814)
chr5 (520-569)||(42108656-42108706)
chr5 (512-560)||(15530217-15530266)
chr5 (424-497)||(36439981-36440054)
[»] chr1 (18 HSPs)
chr1 (516-551)||(4362332-4362367)
chr1 (512-570)||(25412209-25412268)
chr1 (520-602)||(11751515-11751597)
chr1 (525-629)||(44665830-44665933)
chr1 (523-579)||(30562411-30562468)
chr1 (520-604)||(40267545-40267630)
chr1 (520-630)||(45339213-45339325)
chr1 (520-552)||(3022738-3022770)
chr1 (512-630)||(3839176-3839296)
chr1 (523-630)||(4402058-4402166)
chr1 (512-552)||(7287159-7287199)
chr1 (516-552)||(27089830-27089866)
chr1 (520-630)||(16010475-16010586)
chr1 (444-494)||(35879710-35879760)
chr1 (520-569)||(51370353-51370403)
chr1 (526-578)||(3532785-3532838)
chr1 (358-395)||(3533885-3533922)
chr1 (516-557)||(6070044-6070085)
[»] scaffold0373 (1 HSPs)
scaffold0373 (523-569)||(7416-7462)


Alignment Details
Target: chr2 (Bit Score: 731; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 8 - 907
Target Start/End: Original strand, 30991941 - 30992840
Alignment:
Q  8 aaaataactcacccgagaaaaatcgggtttg---gtatagatgaaagtaagttgggccgatttagactttaatgtttaggtctaaaaagttacgcaattt 104  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  30991941 aaaataactcacccgagaaaattcgggtttgtctgtatagatgaaagtaagtttgaccgatttagacttcaatgtttaggtctaaaaagttacgcaattt 30992040  T
Q  105 cactttcgattgcctgattttgtgtgtaagatctaatcatatgatcataactcttgatcgattattgtttggtcaagtgagtaatttttgaggtgtctat 204  Q
    |||||||||||||||||||||||||||||||||| |||||||   | ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30992041 cactttcgattgcctgattttgtgtgtaagatctgatcatat---cgtaactcttgatcgattattgtctggtcaagtgagtaatttttgaggtgtctat 30992137  T
Q  205 tgagcaaccatcttatatctaccttgtcgaaatattgaagatgtaagtttggcttgtagcttatcataggcttgttttgtataagattttacttgacttt 304  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30992138 tgagcaaccatcgtatatctgccttgtcgaaatattgaagatgtaagtttggcttgtagcttatcataggcttgttttgtataagattttacctgacttt 30992237  T
Q  305 tcaaaaatctgatatgacatgttaacctgtttgaaaacatatttcatatcaacgtatttaattaagtaatatgatccatgtttaaataaatgaactaata 404  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30992238 tcaaaaatctgatatgacatgttaacctatttgaaaacatatttcatatcaacgtatttaattaagtaatatgatctatgtttaaataaatgaactaata 30992337  T
Q  405 tatcatattagaggtgtctattaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattctagnnnnnn 504  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||           
T  30992338 tatcgtattagaggtgtctattaaactctctttgaatagttaatatgacattttagagattttgactatatatgatatcatatttcaattctaatttttt 30992437  T
Q  505 nnaaggattctattttagtttataataatacatttaaatatgcaaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataat 604  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30992438 ttaaggattctattttagtttataataatacatttaaatatgcaaaaattaatatagactaataagtttgaattagtgtaaaatttaacatatttataat 30992537  T
Q  605 taagtctaaagtacaaaatctaatatcacaattatagtagtaaaaagtattatcacttaagtacatcggccttgtaggcctaaaacatttttatatggtc 704  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||||||||||  |||||||||||||    
T  30992538 taagtctaaagtacaaaatctaatatcacaatgatagtagtaaaaagtattatcagttaagtacattagccttgtaggcctaaaaggtttttatatggtc 30992637  T
Q  705 catgacctgacacttttagttaaacaaacttttaaaaaagggtttgtcttccgtgtttaatcaaaaagtctagtttaccatgacctcatgtaggctagtc 804  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30992638 catgacctgacacttttagttaaacaaacttttaaaaaagggtttgccttccgtgtttcatcaaaaagtctagtttaccatgacctcatgtaggctagtc 30992737  T
Q  805 gtaagcctctgtaggttgatttggtctattcccacccctacacatctgcaacagtttcaagcttatattttgacggatatcagtttatgcaggttgttca 904  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  30992738 gtaagcctatgtaggttgatctggtctattctcacccctacacatctgcaatagtttcaagcttatattttgacggatattagtttatgcaggttggtca 30992837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 9730276 - 9730386
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtaca 619  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||||  || |||||  | |||| |||||| |||| || || | |  ||||||||    
T  9730276 tagtttataataatacatttaaatatgtaaaaattaatgtatactaataaccttaaattaccgaaaaagttaacaaatttttattttaattcaaagtaca 9730375  T
Q  620 aaatctaatat 630  Q
    |||| ||||||    
T  9730376 aaatataatat 9730386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 623
Target Start/End: Original strand, 10057367 - 10057471
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||||| ||| ||| | || |||| |||||| ||||||| || | |  |||||||    
T  10057367 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataagtttaaataattgaaaaagttaacaaatttatattttaattcaaagtac 10057466  T
Q  619 aaaat 623  Q
    |||||    
T  10057467 aaaat 10057471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 4816677 - 4816618
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaa-ttaatatagactaataaa 570  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  4816677 ttctattctagtttataataatacatttatatatgcaaaaacttaatgtatactaataaa 4816618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 9716257 - 9716198
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgca-aaaattaatatagactaataaa 570  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||| || |||||||||    
T  9716257 ttctattctagtttataataatacatttatatatgcaaaaaattaatgtatactaataaa 9716198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 35730903 - 35730854
Alignment:
Q  444 ttaatatgacattttagaaattttgactatatatgatatcatatttcaat 493  Q
    |||| |||| |||||||||| ||||||||||||||| |||||||||||||    
T  35730903 ttaacatgatattttagaaaatttgactatatatgacatcatatttcaat 35730854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 40629308 - 40629361
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatt 572  Q
    ||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||    
T  40629308 tagtttataataataaatttaaatatgcgaaaaactaatgtagactaataaatt 40629361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 630
Target Start/End: Original strand, 13560094 - 13560202
Alignment:
Q  523 tttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtacaaa 621  Q
    ||||||||||||||||||||| ||| |||||||||| || ||||||||| || ||||| || |||| |||||  ||| ||| || | |  ||||||||||    
T  13560094 tttataataatacatttaaatgtgcaaaaaattaatgtatactaataaaattaaattactgaaaaagttaactaattcatattttaattcaaagtacaaa 13560193  T
Q  622 atctaatat 630  Q
    || ||||||    
T  13560194 atataatat 13560202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 575
Target Start/End: Original strand, 27023488 - 27023544
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttga 575  Q
    |||||||||||||||||| ||||||||| ||||| |||| ||||||||||| |||||    
T  27023488 tagtttataataatacatataaatatgcaaaaaagtaatgtagactaataagtttga 27023544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 31514941 - 31514977
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaa 556  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31514941 tagtttataataatacatttaaatatacaaaaattaa 31514977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 579
Target Start/End: Complemental strand, 39232538 - 39232475
Alignment:
Q  516 attttagtttataataatacatttaaatatgcaa-aaattaatatagactaataaatttgaatta 579  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||| || |||||    
T  39232538 attttagtttataataatatatttaaa-atgcaacaaattaatataaactaataaacttaaatta 39232475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 34825630 - 34825576
Alignment:
Q  338 aaaacatatttcatatcaacgtatttaattaagtaatatgatccatgtttaaata 392  Q
    ||||| |||||||||| ||| | ||||| ||||||||||||| ||||||||||||    
T  34825630 aaaacctatttcatatgaacatctttaaataagtaatatgattcatgtttaaata 34825576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 27081400 - 27081347
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaat-taatatagactaataaatttga 575  Q
    |||||||||||| ||||||||||||||| || |||| ||||||||||| |||||    
T  27081400 tttataataatatatttaaatatgcaaatatgtaatgtagactaataattttga 27081347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 34825520 - 34825479
Alignment:
Q  453 cattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    ||||||||| | ||||||||||||||| ||||||||||||||    
T  34825520 cattttagagaatttgactatatatgaaatcatatttcaatt 34825479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 494
Target Start/End: Original strand, 44253054 - 44253099
Alignment:
Q  449 atgacattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    ||||||||||||| | ||| |||||||||||||| |||||||||||    
T  44253054 atgacattttagataatttaactatatatgatataatatttcaatt 44253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 519 - 623
Target Start/End: Complemental strand, 29717565 - 29717460
Alignment:
Q  519 ttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagta 617  Q
    ||||||| ||||||||||||||||||| | |||||| ||| |||| | |||| ||| ||||| || ||||||||||| |||||||||||| |||||||||    
T  29717565 ttagtttgtaataatacatttaaatatactaaaaatcaatgtagattgataagtttaaattaatgaaaaatttaacaaatttataattaaatctaaagta 29717466  T
Q  618 caaaat 623  Q
     |||||    
T  29717465 taaaat 29717460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 630
Target Start/End: Complemental strand, 21523788 - 21523673
Alignment:
Q  516 attttagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaa 614  Q
    |||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||  || ||||| |  || | ||||||||||||||||| | |  |||    
T  21523788 attttagtttataataatacatataaatatgcaaaaaattaatgtaggctaataagcttaaattactaaaacagttaacatatttataatttaattcaaa 21523689  T
Q  615 gtacaaaatctaatat 630  Q
    ||||||||| ||||||    
T  21523688 gtacaaaatataatat 21523673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 512 - 630
Target Start/End: Original strand, 9503954 - 9504074
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaa-tttgaattagtgtaaaatttaacatatttataattaagt 609  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||  || ||||| || |||| || ||||||||||| || | |    
T  9503954 ttctattctagtttataataatacatttatatatgcaaaaaattaatgtatactaataaagattaaattattgaaaaagtttacatatttatactttaat 9504053  T
Q  610 ctaaagtacaaaatctaatat 630  Q
      |||||||||||| ||||||    
T  9504054 tcaaagtacaaaatataatat 9504074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 34008443 - 34008376
Alignment:
Q  427 aaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    |||||| |||| |||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  34008443 aaactcccttttaatatttaacatgacattttagagaattttactatatatgatatcatatttcaatt 34008376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 29563618 - 29563538
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||  || ||||| || |||| |||||| ||||    
T  29563618 tagtttataataatacatttaaatatgcataaaattaatgtatactaataagcttaaattactgaaaaagttaacaaattt 29563538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 27048705 - 27048788
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata 602  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||  || ||||| || |||| |||||| |||||||    
T  27048705 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataatgttaaattattgaaaaagttaacaaatttata 27048788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 33458595 - 33458545
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  33458595 tagtttataataatacatttaaatatgcgagaaattaatatatactaataa 33458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 52426440 - 52426487
Alignment:
Q  523 tttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  52426440 tttataataatacatttaaatatgcgaaaaaataatataaactaataa 52426487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 11836953 - 11836879
Alignment:
Q  423 tattaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattcta 497  Q
    |||||||||||||||  ||| |||| || |  ||||||| | ||| ||||||||| |||||||||||||||||||    
T  11836953 tattaaactctctttcgatatttaacatcaagttttagagaattttactatatattatatcatatttcaattcta 11836879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 20601729 - 20601781
Alignment:
Q  520 tagtttataataatacatttaaatatgc--aaaaattaatatagactaataaa 570  Q
    |||||||||||||||||||||||||| |  |||||||||| || |||||||||    
T  20601729 tagtttataataatacatttaaatataccaaaaaattaatgtatactaataaa 20601781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 630
Target Start/End: Complemental strand, 34008361 - 34008288
Alignment:
Q  557 tatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtacaaaatctaatat 630  Q
    |||||||||||||| || ||| |  | ||||||||||| |||||||||| | || |||||||||||| ||||||    
T  34008361 tatagactaataaacttaaatcatcgaaaaatttaacaaatttataatttaatcaaaagtacaaaatataatat 34008288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 39722099 - 39722025
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    |||||||||| |||  ||| |||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  39722099 attaaactctattttgatatttaagatgacattttagaaaatttaactatatatgatttcatatttcaattctag 39722025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 6892993 - 6892918
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaa-attaatatagactaataaatttgaattagtgtaaaatttaaca 594  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||  || ||||| || |||| ||||||    
T  6892993 tagtttataataatacatttaaatatgcaaaacattaatgtatactaataagcttaaattattgaaaaagttaaca 6892918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 26660187 - 26660258
Alignment:
Q  423 tattaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    ||||||||||||||| |||| |||| ||||  |||||||||  || ||||||||| ||||||||||||||||    
T  26660187 tattaaactctctttcaatatttaacatgaagttttagaaaaatttactatatattatatcatatttcaatt 26660258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 4576655 - 4576605
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataa 569  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  4576655 tagtttataataataaatttaaatatgcaaaaaattaatatatactaataa 4576605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 602
Target Start/End: Original strand, 56092300 - 56092385
Alignment:
Q  518 tttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata 602  Q
    ||||||||||||||||||||||||||||||  |||||||||  | ||||||||  || ||||| || ||||||| ||| |||||||    
T  56092300 tttagtttataataatacatttaaatatgcggaaaattaatgcatactaataagcttaaattactgaaaaatttgacaaatttata 56092385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 4576696 - 4576653
Alignment:
Q  455 ttttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    |||||| || ||||||||||||| ||||||||||||||||||||    
T  4576696 ttttaggaaatttgactatatattatatcatatttcaattctag 4576653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 6829004 - 6828958
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||||||| |||| |||| || ||||||||    
T  6829004 tttataataatacatttaaatatgcgaaaaataatgtaaactaataa 6828958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 11432496 - 11432422
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    ||||||||||||||  ||| | || ||||  ||||||| | |||||||||||||  |||||||||||||||||||    
T  11432496 attaaactctcttttgataatcaacatgaatttttagagaatttgactatatattgtatcatatttcaattctag 11432422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 32519866 - 32519947
Alignment:
Q  520 tagtttataataatacatttaaatatgc--aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    |||||||||||||||||||||||| |||  ||||| |||| || ||||||||  || ||||| |||||| ||||||| ||||    
T  32519866 tagtttataataatacatttaaatgtgcaaaaaaaataatgtatactaataagcttaaattactgtaaagtttaacaaattt 32519947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 552
Target Start/End: Complemental strand, 12154257 - 12154228
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaa 552  Q
    ||||||||||||||||||||||||||||||    
T  12154257 tttataataatacatttaaatatgcaaaaa 12154228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 552
Target Start/End: Original strand, 26660263 - 26660292
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaa 552  Q
    ||||||||||||||||||||||||||||||    
T  26660263 tttataataatacatttaaatatgcaaaaa 26660292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 579
Target Start/End: Original strand, 36706400 - 36706457
Alignment:
Q  523 tttataataatacatttaaatatg-caaaaattaatatagactaataaatttgaatta 579  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||||||| ||| |||||    
T  36706400 tttataataatacatttaaatttgaaaaaaattaatgtagactaataagtttaaatta 36706457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 25107371 - 25107303
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaatta 579  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||| || |||||    
T  25107371 ttctattctagtttataataatacatttaaatatgcaaaaaattaatgtatactaataaacttaaatta 25107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 512 - 630
Target Start/End: Original strand, 2374412 - 2374531
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaattaatatagactaataaa-tttgaattagtgtaaaatttaacatatttataattaagtc 610  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | ||||| |||||||||  || ||||| || |||| || ||| ||||||| || | |     
T  2374412 ttctattctagtttataataatacatttatatatgcaaaaaattatatatactaataaagcttaaattattgaaaaagtttacaaatttatattttaatt 2374511  T
Q  611 taaagtacaaaatctaatat 630  Q
     |||||||||||| ||||||    
T  2374512 caaagtacaaaatataatat 2374531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 2510600 - 2510711
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||||||||||||||||||||||||| |||||||||| || ||||||||  || ||||| || |||| |||||| |||| || || | |  |||||||    
T  2510600 tagtttataataatacatttaaatatgcaaaaaattaatgtatactaataagcttaaattactgaaaaagttaacacatttttattttaattcaaagtac 2510699  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  2510700 aaaatataatat 2510711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 255054 - 255165
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata-attaagtctaaagta 617  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||  || ||||| || |||| |||||| || |||| ||||| || ||||||    
T  255054 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataagcttaaattattgaaaaagttaacaaatctatatattaattc-aaagta 255152  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  255153 caaaatataatat 255165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 660866 - 660755
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata-attaagtctaaagta 617  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||  || ||||| || |||| |||||| || |||| ||||| || ||||||    
T  660866 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataagcttaaattattgaaaaagttaacaaatctatatattaattc-aaagta 660768  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  660767 caaaatataatat 660755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 846602 - 846491
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata-attaagtctaaagta 617  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||  || ||||| || |||| |||||| || |||| ||||| || ||||||    
T  846602 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataagcttaaattattgaaaaagttaacaaatctatatattaattc-aaagta 846504  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  846503 caaaatataatat 846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 570
Target Start/End: Original strand, 9552656 - 9552716
Alignment:
Q  511 attctattttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaa 570  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||| | |||||||||    
T  9552656 attcaattttagtttataataatacatttaaatatgcgaaaaatgaatacacactaataaa 9552716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 630
Target Start/End: Original strand, 10812023 - 10812143
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaa-tttgaattagtgtaaaatttaacatatttataattaagt 609  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||  || ||||| || |||| || ||| ||||||| || | |    
T  10812023 ttctattctagtttataataatacatttatatatgcaaaaaattaatgtatactaataaagcttaaattattgaaaaagtttacaaatttatattttaat 10812122  T
Q  610 ctaaagtacaaaatctaatat 630  Q
      |||||||||||| ||||||    
T  10812123 tcaaagtacaaaatataatat 10812143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 16998092 - 16998204
Alignment:
Q  520 tagtttataataatac-atttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagta 617  Q
    |||||||||||||||| |||||||||||| |||||||||| || ||||||||| || ||||| || |||| ||||||  ||| || || | | |||||||    
T  16998092 tagtttataataataccatttaaatatgcaaaaaattaatttatactaataaacttaaattactgaaaaagttaacacgtttttattttaatataaagta 16998191  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  16998192 caaaatataatat 16998204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 31587899 - 31587819
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||||||||| |  ||||| || || | |||||||||||    
T  31587899 tagtttataataatacatataaatatgcaaaaaattaatgtagactaataaactaaaattactgaaacagttaacatattt 31587819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 40691302 - 40691382
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaa-attaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||||||  || ||||| || || | |||||||||||    
T  40691302 tagtttataataatacatataaatatgcaaaatattaatgtagactaataagcttaaattactgaaacaattaacatattt 40691382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 2620160 - 2620085
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaaca 594  Q
    ||||||||||||||||||||||||||||| ||||| ||| || ||||||||  || ||||| || |||||||||||    
T  2620160 tagtttataataatacatttaaatatgcaaaaaataaatgtatactaataagcttaaattactgaaaaatttaaca 2620085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 9617434 - 9617484
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaa-ttaatatagactaataa 569  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  9617434 tagtttataataatacatttaaatatgcaaaaagttaatgtatactaataa 9617484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 39139483 - 39139595
Alignment:
Q  520 tagtttataataatacatttaaatatgc--aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagta 617  Q
    ||||||||||||||| || |||||||||  |||||||||| |||||||||||| || ||||| || || | ||| ||||||| || || | |  ||||||    
T  39139483 tagtttataataataaatataaatatgcaaaaaaattaatgtagactaataaacttaaattactgaaacagttagcatatttttattttaattcaaagta 39139582  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  39139583 caaaatataatat 39139595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 3457882 - 3457842
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaa 552  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  3457882 ttctattctagtttataataatacatttatatatgcaaaaa 3457842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 552
Target Start/End: Original strand, 22738737 - 22738769
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaa 552  Q
    |||||||||||||||||||||||||||||||||    
T  22738737 tagtttataataatacatttaaatatgcaaaaa 22738769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 2062610 - 2062500
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||| ||||| |||||||||||||||| ||||||||| || ||||||||  || ||||| ||| |||||||||| |||| || || | | |||||||     
T  2062610 tagtttgtaatagtacatttaaatatgcaaaaaattaatgtatactaataagcttaaattactgt-aaatttaacaaatttttattttaatttaaagtat 2062512  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  2062511 aaaatataatat 2062500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 12942299 - 12942358
Alignment:
Q  521 agtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaatta 579  Q
    |||||||||||||||||||||| |||| ||||| |||| || |||||||||||| |||||    
T  12942299 agtttataataatacatttaaaaatgcaaaaaaataatgtatactaataaatttaaatta 12942358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 44652535 - 44652425
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaa-attaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||||||||||| ||||||||||||||||| ||||||  | |||||||| ||| ||||| || |||| |||||| |||| || || | |  |||||||    
T  44652535 tagtttataataatgcatttaaatatgcaaaagattaatgcatactaataagtttaaattattg-aaaagttaacaaatttttattttaattcaaagtac 44652437  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  44652436 aaaatataatat 44652425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 497
Target Start/End: Original strand, 45322399 - 45322458
Alignment:
Q  438 gaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattcta 497  Q
    ||||| |||| |||||||| |||| | | ||||||||||| |||||||||||||||||||    
T  45322399 gaatatttaacatgacattgtagagaatatgactatatataatatcatatttcaattcta 45322458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 10710086 - 10710036
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    |||||||||||||||||||||||| ||| |||||||||| || ||||||||    
T  10710086 tagtttataataatacatttaaatgtgcaaaaaattaatgtatactaataa 10710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 30469438 - 30469512
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    ||||||||||||||  ||| | || ||||  |||||| || |||||||||||||  |||||||||||||||||||    
T  30469438 attaaactctcttttgataatcaacatgagtttttaggaaatttgactatatattgtatcatatttcaattctag 30469512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 39628782 - 39628732
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||    
T  39628782 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataa 39628732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 39638332 - 39638282
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||    
T  39638332 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataa 39638282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 550
Target Start/End: Complemental strand, 34405873 - 34405844
Alignment:
Q  521 agtttataataatacatttaaatatgcaaa 550  Q
    ||||||||||||||||||||||||||||||    
T  34405873 agtttataataatacatttaaatatgcaaa 34405844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 579
Target Start/End: Original strand, 35458921 - 35458978
Alignment:
Q  523 tttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaatta 579  Q
    ||||||||||||||||||||||||| ||||| |||| || |||||||| ||| |||||    
T  35458921 tttataataatacatttaaatatgcgaaaaaataatgtacactaataagtttaaatta 35458978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 18330764 - 18330653
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||  || ||||| || |||| |||||| ||||||| || | |  |||||||    
T  18330764 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataaccttaaattattgaaaaagttaacaaatttatattttaattcaaagtac 18330665  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  18330664 aaaatataatat 18330653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 25685432 - 25685543
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||||||||||||||| ||||||||| |||||||| | |||||||||||| || ||||| || || | ||||||||||| || || | |  |||||||    
T  25685432 tagtttataataatacatataaatatgcaaaaaattagtgtagactaataaacttaaattactgaaacagttaacatatttttattttaattcaaagtac 25685531  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  25685532 aaaatataatat 25685543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 42672899 - 42673010
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||||||||  | ||||| || || | ||||||||||| || || | |  |||||||    
T  42672899 tagtttataataatacatataaatatgcaaaaaattaatgtagactaataaacataaattactgaaacagttaacatatttttattttaattcaaagtac 42672998  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  42672999 aaaatataatat 42673010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 10577623 - 10577693
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    ||||||||||||||  ||| |||| |||| |||||||| | |||||| |||||||||||||||||||||||    
T  10577623 attaaactctctttagatatttaacatgatattttagagaatttgacaatatatgatatcatatttcaatt 10577693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 18793709 - 18793783
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    ||||||||||||||  ||| |||| ||||  ||||||| | ||||||||||||| ||||||||||||||||||||    
T  18793709 attaaactctcttttgatatttaacatgaatttttagagaatttgactatatattatatcatatttcaattctag 18793783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 25072828 - 25072910
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataatt 605  Q
    ||||||||||||||||||||||||| |||| |||| || |||||||| ||| ||||| | ||||| || ||| ||||||||||    
T  25072828 tttataataatacatttaaatatgcgaaaaataatgtaaactaataagtttaaattattttaaaagttgacaaatttataatt 25072910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 39727376 - 39727456
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    ||||||||||||||||||||||| |||| ||||||||| ||| ||||||||| || ||||| || |||| |||||| ||||    
T  39727376 tagtttataataatacatttaaacatgcaaaaaattaacatatactaataaacttaaattattgaaaaagttaacaaattt 39727456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 18879644 - 18879585
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaa-ttaatatagactaataaa 570  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  18879644 ttctattttaatttataataatacatttatatatgcaaaaatttaatgtatactaataaa 18879585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 41759017 - 41759068
Alignment:
Q  444 ttaatatgacattttagaaattttgactatatatgatatcatatttcaattc 495  Q
    |||| ||||||||||||| | ||||| |||||||||||||||||||||||||    
T  41759017 ttaaaatgacattttagagaatttgagtatatatgatatcatatttcaattc 41759068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 37849302 - 37849356
Alignment:
Q  517 ttttagtttataataatacatttaaatatgcaaaaattaatatagactaataaat 571  Q
    ||||| ||||||||||||||||||||||| | ||||||||| ||||| |||||||    
T  37849302 ttttaatttataataatacatttaaatatacgaaaattaatgtagacaaataaat 37849356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 9479425 - 9479474
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||||||    
T  9479425 tagtttataataatacatttaaacatgaaaaaattaatgtatactaataa 9479474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 32420492 - 32420572
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatattt 599  Q
    ||||||||||||| |||||||||||||| |||||||||| || ||||||||  || ||||| | ||||| |||||| ||||    
T  32420492 tagtttataataaaacatttaaatatgcaaaaaattaatgtatactaataagcttaaattactataaaagttaacaaattt 32420572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 605
Target Start/End: Original strand, 43337008 - 43337095
Alignment:
Q  516 attttagtttataataatacatttaaatatg-caaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataatt 605  Q
    |||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||| || |   | || ||||||||||| ||||||||||    
T  43337008 atttaagtttataataatagatttaaatatgtcaaaagttaatatagattaataaacttaa---aatgaaaaatttaacaaatttataatt 43337095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 41937742 - 41937691
Alignment:
Q  520 tagtttataataatacatttaaatatgcaa-aaattaatatagactaataaa 570  Q
    ||||||||||||||||||||| |||||||| |||||||| || |||||||||    
T  41937742 tagtttataataatacatttatatatgcaataaattaatgtatactaataaa 41937691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 32684370 - 32684404
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaatt 554  Q
    |||||||||||| ||||||||||||||||||||||    
T  32684370 tagtttataatattacatttaaatatgcaaaaatt 32684404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 630
Target Start/End: Complemental strand, 28248976 - 28248863
Alignment:
Q  518 tttagtttataataatacatttaaatatg-caaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagt 616  Q
    ||||||||||||| |||||||||||||||  ||| |||||| || ||||||||| || ||||| || |||  |||||| ||||| | || | |  |||||    
T  28248976 tttagtttataatcatacatttaaatatgtgaaagattaatgtatactaataaacttaaattactgaaaaggttaacaaatttaaattttaattcaaagt 28248877  T
Q  617 acaaaatctaatat 630  Q
    ||||||| ||||||    
T  28248876 acaaaatataatat 28248863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 545
Target Start/End: Complemental strand, 40727127 - 40727094
Alignment:
Q  512 ttctattttagtttataataatacatttaaatat 545  Q
    ||||||||||||||||||||||||||||| ||||    
T  40727127 ttctattttagtttataataatacatttatatat 40727094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 604
Target Start/End: Complemental strand, 42766566 - 42766481
Alignment:
Q  520 tagtttataataatacatttaaatatg-caaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataat 604  Q
    ||||||||||||||||||||||| |||  |||||||||  ||||||| |||  || ||||| ||||||  |||||| |||||||||    
T  42766566 tagtttataataatacatttaaacatgtaaaaaattaacgtagactagtaagcttaaattactgtaaaggttaacaaatttataat 42766481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 622
Target Start/End: Complemental strand, 6228120 - 6228018
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||||| ||| ||||| || |||| |||||| ||||||| || | | ||||||||    
T  6228120 tagtttataataatacatttatatatgcgaaaaattaatgtatactaataagtttaaattactgaaaaagttaaca-atttatattttaatttaaagtac 6228022  T
Q  619 aaaa 622  Q
    ||||    
T  6228021 aaaa 6228018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 26244277 - 26244233
Alignment:
Q  516 attttagtttataataatacatttaaatatgcaaaaattaatata 560  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  26244277 attttagtttataataatacatttatatatgcgaaaattaatata 26244233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 516 - 570
Target Start/End: Complemental strand, 24556601 - 24556546
Alignment:
Q  516 attttagtttataataatacatttaaatatgca-aaaattaatatagactaataaa 570  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||    
T  24556601 attttagtttataataatacgtttatatatgcaaaaaattaatatatactaataaa 24556546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 605
Target Start/End: Complemental strand, 33599400 - 33599316
Alignment:
Q  522 gtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataatt 605  Q
    |||||||||||||| ||||||||||| |||||||| | || ||||||||   ||||||| ||||||  |||||| ||||||||||    
T  33599400 gtttataataatacttttaaatatgcgaaaaattattgtatactaataatcctgaattactgtaaaggttaacaaatttataatt 33599316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 8351206 - 8351093
Alignment:
Q  520 tagtttataataatacatttaaatat-gcaaaaattaatatagactaataaatttgaatt--agtgtaaaatttaacatatttataattaagtctaaagt 616  Q
    |||||||||||||||||||| |||||   ||||| ||||||||||||||||  || ||||  |||  ||||||||||| |||||||||| | |  |||||    
T  8351206 tagtttataataatacatttgaatataagaaaaaataatatagactaataagcttaaattacagtacaaaatttaacaaatttataatttaattcaaagt 8351107  T
Q  617 acaaaatctaatat 630  Q
    | ||||| ||||||    
T  8351106 ataaaatataatat 8351093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 33248198 - 33248248
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    ||||||||| |||||||||||||||||| |||||||||| || ||||||||    
T  33248198 tagtttatactaatacatttaaatatgcaaaaaattaatttatactaataa 33248248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 10938 - 10864
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaatatagactaataaatttgaattagtgtaaaatttaaca 594  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||||||||| || ||||| || |||| ||||||    
T  10938 tagtttagaataatacatttaaatatgcaaaaattaatgaatactaataaacttaaattactgaaaaagttaaca 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Original strand, 14830725 - 14830784
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgc-aaaaattaatatagactaataaa 570  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||    
T  14830725 ttctattctagtttataataatacatttatatatgcaaaaaattaatgtatactaataaa 14830784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 32906958 - 32907041
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata 602  Q
    ||||||||||||||||||||  |||||| |||||||||| || ||||||||| || ||||| || |||| |||||| |||||||    
T  32906958 tagtttataataatacatttttatatgcgaaaaattaatgtatactaataaacttaaattattgaaaaagttaacaaatttata 32907041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 22859714 - 22859640
Alignment:
Q  423 tattaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattcta 497  Q
    |||||||||||||||  ||| |||||||||  ||||||| |  || ||||||||| |||||||||||||||||||    
T  22859714 tattaaactctcttttgatatttaatatgaagttttagagaactttactatatattatatcatatttcaattcta 22859640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 630
Target Start/End: Complemental strand, 41873182 - 41873077
Alignment:
Q  528 aataatacatttaaatatgcaaaaa--ttaatatagactaataaat-ttgaattagtgtaaaatttaacatatttataattaagtctaaagtacaaaatc 624  Q
    ||||||||||||| |||||||||||  ||||| || |||||||||  || |||||||| |||| |||||| ||||||| || | | |||||||||||||     
T  41873182 aataatacatttatatatgcaaaaaaattaatgtatactaataaagcttaaattagtgaaaaagttaacaaatttatattttaatttaaagtacaaaata 41873083  T
Q  625 taatat 630  Q
    ||||||    
T  41873082 taatat 41873077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 579
Target Start/End: Original strand, 36440056 - 36440113
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaat-taatatagactaataaatttgaatta 579  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| || |||||    
T  36440056 tttataataatacatttaaatatgcaaaaatataatgtatactaataaacttaaatta 36440113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 16885580 - 16885620
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaa 552  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  16885580 ttctattctagtttataataatacatttatatatgcaaaaa 16885620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 552
Target Start/End: Original strand, 40514906 - 40514938
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaa 552  Q
    |||||||||||||||||||||||||||||||||    
T  40514906 tagtttataataatacatttaaatatgcaaaaa 40514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 552
Target Start/End: Complemental strand, 8570210 - 8570179
Alignment:
Q  521 agtttataataatacatttaaatatgcaaaaa 552  Q
    ||||||||||||||||||||||||||||||||    
T  8570210 agtttataataatacatttaaatatgcaaaaa 8570179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 9190082 - 9190137
Alignment:
Q  434 ctttgaatagttaatatgacattttagaaattttgactatatatgatatcatattt 489  Q
    ||||| ||| |||| ||||||||||||| | |||||||||| ||||||||||||||    
T  9190082 ctttggatatttaacatgacattttagagaatttgactatagatgatatcatattt 9190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 38876722 - 38876765
Alignment:
Q  455 ttttagaaattttgactatatatgatatcatatttcaattctag 498  Q
    ||||||||| |||||||||||||  |||||||||||||||||||    
T  38876722 ttttagaaaatttgactatatattgtatcatatttcaattctag 38876765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 8570374 - 8570324
Alignment:
Q  330 cctgtttgaaaacatatttcatatcaacgtatttaattaagtaatatgatc 380  Q
    ||||||| ||||| |||||||||| ||||||||||| |||||||| |||||    
T  8570374 cctgtttaaaaacctatttcatatgaacgtatttaaataagtaatgtgatc 8570324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 15577928 - 15577970
Alignment:
Q  455 ttttagaaattttgactatatatgatatcatatttcaattcta 497  Q
    ||||||| | ||||||||||||| |||||||||||||||||||    
T  15577928 ttttagagaatttgactatatattatatcatatttcaattcta 15577970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 19298047 - 19297997
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaa-ttaatatagactaataa 569  Q
    ||||||||||||||||||||| ||||||||||| ||||| || ||||||||    
T  19298047 tagtttataataatacatttatatatgcaaaaagttaatgtatactaataa 19297997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 40201814 - 40201776
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaata 558  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  40201814 tagtttataataatacatttaaatattcaaaaaataata 40201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 42108656 - 42108706
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    |||||||||||||||||| ||||||||| |||||||||| |||| ||||||    
T  42108656 tagtttataataatacatataaatatgcaaaaaattaatgtagattaataa 42108706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 15530217 - 15530266
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaa-aaattaatata 560  Q
    ||||||| ||||||||||||||||||||  |||||||| |||||||||||    
T  15530217 ttctattctagtttataataatacatttttatatgcaacaaattaatata 15530266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 497
Target Start/End: Original strand, 36439981 - 36440054
Alignment:
Q  424 attaaactctctttgaatagttaatatgacattttagaaattttgactatatatgatatcatatttcaattcta 497  Q
    ||||||||||||||  ||| | || ||||| ||||||| | ||||| |||||||  ||||||||||||||||||    
T  36439981 attaaactctcttttgataatcaacatgactttttagagaatttgattatatattgtatcatatttcaattcta 36440054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 516 - 551
Target Start/End: Original strand, 4362332 - 4362367
Alignment:
Q  516 attttagtttataataatacatttaaatatgcaaaa 551  Q
    ||||||||||||||||||||||||||||||||||||    
T  4362332 attttagtttataataatacatttaaatatgcaaaa 4362367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 25412268 - 25412209
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgca-aaaattaatatagactaataaa 570  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||| || |||||||||    
T  25412268 ttctattctagtttataataatacatttatatatgcaaaaaattaatgtatactaataaa 25412209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 602
Target Start/End: Complemental strand, 11751597 - 11751515
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttata 602  Q
    ||||||||||||||| | ||| ||||| ||||| ||||||| |||||||| ||| ||||| || |||| |||||| |||||||    
T  11751597 tagtttataataataaaattatatatgaaaaaactaatatatactaataagtttaaattattgaaaaagttaacaaatttata 11751515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 629
Target Start/End: Complemental strand, 44665933 - 44665830
Alignment:
Q  525 tataataatacatttaaatatgcaaaa-attaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtacaaaat 623  Q
    ||||||||||||||||||||| ||| | |||||| ||||||| ||| ||| ||||||   |||| |||||| |||||||||| | ||| |||||||||||    
T  44665933 tataataatacatttaaatatacaatacattaatgtagactactaattttaaattaga--aaaagttaacaaatttataatttaatcttaagtacaaaat 44665836  T
Q  624 ctaata 629  Q
     |||||    
T  44665835 ttaata 44665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 579
Target Start/End: Original strand, 30562411 - 30562468
Alignment:
Q  523 tttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaatta 579  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||||| || |||||    
T  30562411 tttataataatacatttaaatatgcaaaaaattaatgtatactaataaacttaaatta 30562468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 604
Target Start/End: Original strand, 40267545 - 40267630
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataat 604  Q
    ||||| |||||||||||||||||||||| ||||| ||| ||| || || ||| || |||||||| |||| |||||| |||||||||    
T  40267545 tagttcataataatacatttaaatatgcgaaaaactaacatacacaaacaaacttaaattagtgaaaaagttaacaaatttataat 40267630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 45339213 - 45339325
Alignment:
Q  520 tagtttataataatacatttaaatatgc--aaaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagta 617  Q
    ||||||||||||||| ||||||||||||  |||||||||| || ||||||||  || ||||| || |||| |||||| |||| || || | |  ||||||    
T  45339213 tagtttataataatatatttaaatatgcaaaaaaattaatgtatactaataagcttaaattactgaaaaagttaacaaatttttattttaattaaaagta 45339312  T
Q  618 caaaatctaatat 630  Q
    |||||| ||||||    
T  45339313 caaaatataatat 45339325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 552
Target Start/End: Original strand, 3022738 - 3022770
Alignment:
Q  520 tagtttataataatacatttaaatatgcaaaaa 552  Q
    |||||||||||||||||||||||||||||||||    
T  3022738 tagtttataataatacatttaaatatgcaaaaa 3022770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 630
Target Start/End: Complemental strand, 3839296 - 3839176
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgca-aaaattaatatagactaat-aaatttgaattagtgtaaaatttaacatatttataattaagt 609  Q
    ||||||| || |||||||||||||||||| ||||||| ||||||||| || |||||| ||| || ||||| || |||| || ||| ||||||| || | |    
T  3839296 ttctattctaatttataataatacatttatatatgcaaaaaattaatgtatactaataaaacttaaattattgaaaaagtttacaaatttatattttaat 3839197  T
Q  610 ctaaagtacaaaatctaatat 630  Q
      |||||||||||| ||||||    
T  3839196 tcaaagtacaaaatataatat 3839176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 4402166 - 4402058
Alignment:
Q  523 tttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtacaaa 621  Q
    |||||||||||||||||||||||||| ||||||||| || | ||||| | || |||||  |||||  |||||| |||||||||| | |  |||||| |||    
T  4402166 tttataataatacatttaaatatgcaaaaaattaatgtaaattaatatacttaaattatagtaaaggttaacaaatttataattgaattcaaagtataaa 4402067  T
Q  622 atctaatat 630  Q
    || ||||||    
T  4402066 atataatat 4402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 7287199 - 7287159
Alignment:
Q  512 ttctattttagtttataataatacatttaaatatgcaaaaa 552  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  7287199 ttctattctagtttataataatacatttatatatgcaaaaa 7287159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 27089830 - 27089866
Alignment:
Q  516 attttagtttataataatacatttaaatatgcaaaaa 552  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27089830 attttagtttataataatacatttaaatatgtaaaaa 27089866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 630
Target Start/End: Complemental strand, 16010586 - 16010475
Alignment:
Q  520 tagtttataataatacatttaaatatgca-aaaattaatatagactaataaatttgaattagtgtaaaatttaacatatttataattaagtctaaagtac 618  Q
    |||||||||||||||||| |||||||||| ||||||||| || ||||||||  || ||||| || |||| |||||  |||| || || | |  |||||||    
T  16010586 tagtttataataatacatataaatatgcaaaaaattaatttatactaataagcttaaattactgaaaaaattaacgcatttttattttaattcaaagtac 16010487  T
Q  619 aaaatctaatat 630  Q
    ||||| ||||||    
T  16010486 aaaatataatat 16010475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 35879710 - 35879760
Alignment:
Q  444 ttaatatgacattttagaaattttgactatatatgatatcatatttcaatt 494  Q
    |||| ||||||||||||| | ||| ||||| ||||||||||||||||||||    
T  35879710 ttaacatgacattttagagaatttaactatttatgatatcatatttcaatt 35879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 51370353 - 51370403
Alignment:
Q  520 tagtttataataatacatttaaatatgc-aaaaattaatatagactaataa 569  Q
    ||||||||||||||||||| |||||||| |||||||||| || ||||||||    
T  51370353 tagtttataataatacattcaaatatgcaaaaaattaatgtatactaataa 51370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 578
Target Start/End: Complemental strand, 3532838 - 3532785
Alignment:
Q  526 ataataatacatttaaatatgca-aaaattaatatagactaataaatttgaatt 578  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||| ||| ||||    
T  3532838 ataataatacatttaaatatgcaaaaaattattgtagactaataattttaaatt 3532785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 3533885 - 3533922
Alignment:
Q  358 gtatttaattaagtaatatgatccatgtttaaataaat 395  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  3533885 gtatttaaataagtaatatgattcatgtttaaataaat 3533922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 6070085 - 6070044
Alignment:
Q  516 attttagtttataataatacatttaaatatgcaaaaattaat 557  Q
    |||||||||||| | |||| ||||||||||||||||||||||    
T  6070085 attttagtttatgacaataaatttaaatatgcaaaaattaat 6070044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 7416 - 7462
Alignment:
Q  523 tttataataatacatttaaatatgcaaaaattaatatagactaataa 569  Q
    ||||||||||||||||||||||||| |||| |||| || ||||||||    
T  7416 tttataataatacatttaaatatgcgaaaaataatgtaaactaataa 7462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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