View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4839-Insertion-4 (Length: 903)

Name: NF4839-Insertion-4
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4839-Insertion-4
NF4839-Insertion-4
[»] chr8 (6 HSPs)
chr8 (8-728)||(43995272-43995998)
chr8 (821-903)||(43996050-43996129)
chr8 (752-793)||(43996008-43996049)
chr8 (150-232)||(20073494-20073578)
chr8 (649-693)||(37687335-37687379)
chr8 (649-699)||(23559000-23559050)
[»] chr3 (4 HSPs)
chr3 (649-794)||(4969886-4970037)
chr3 (649-699)||(6162699-6162749)
chr3 (752-809)||(33148926-33148982)
chr3 (649-699)||(44833481-44833531)
[»] chr4 (6 HSPs)
chr4 (649-809)||(37576554-37576720)
chr4 (649-699)||(51718185-51718235)
chr4 (649-699)||(33164522-33164572)
chr4 (649-683)||(34235737-34235771)
chr4 (180-222)||(42807303-42807345)
chr4 (180-222)||(42817685-42817727)
[»] chr7 (3 HSPs)
chr7 (725-848)||(5060917-5061045)
chr7 (656-699)||(20379685-20379728)
chr7 (649-695)||(5060859-5060905)
[»] scaffold1063 (1 HSPs)
scaffold1063 (649-700)||(1486-1537)
[»] chr5 (1 HSPs)
chr5 (752-839)||(34708656-34708743)
[»] chr2 (2 HSPs)
chr2 (655-710)||(20686808-20686863)
chr2 (648-699)||(37893025-37893076)
[»] chr6 (2 HSPs)
chr6 (649-699)||(35060912-35060962)
chr6 (655-696)||(17436053-17436094)
[»] chr1 (9 HSPs)
chr1 (649-697)||(3792571-3792619)
chr1 (753-809)||(27039365-27039421)
chr1 (655-699)||(28442939-28442983)
chr1 (650-712)||(5602956-5603018)
chr1 (665-699)||(33403143-33403177)
chr1 (649-699)||(39650207-39650257)
chr1 (649-699)||(45691065-45691115)
chr1 (649-699)||(45691207-45691257)
chr1 (649-699)||(45691349-45691399)


Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 728
Target Start/End: Original strand, 43995272 - 43995998
Alignment:
Q  8 tacactacatatgactcctgagacccaatacgtgactggactcctcctcctccccctccttgttttgaccgctctctttgccatgagctt-------cat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||       |||    
T  43995272 tacactacatatgactcctgagacccaatacgtgactggactcctcctcc---ctctccttgttttgaccgctctctttgccatgagcttatgccttcat 43995368  T
Q  101 ccctcttttttgatatgtattccgtcatttgtttaaacccatatgtgaattgggaaaatggtgttgtgtttgcaatttggagtggtgcaggacataattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43995369 ccctcttttttgatatgtattccgtcatttgtttaaacccatatgtgaattgggaaaatggtgttgtgtttgcaatttggagtggtgcaggacataattt 43995468  T
Q  201 ctcaaggaaatcaaccattaaacagttgatttcatcatgattcatcaaacgaaaaaatcgcaccagaaaaataatgattcatcaaagtaatttcatccta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43995469 ctcaaggaaatcaaccattaaacagttgatttcatcatgattcatcaaacgaaaaaatcgcaccagaaaaataatgattcatcaaagtaatttcatccta 43995568  T
Q  301 attaaaatgaaaaatggaaccactaaaagg---gtaggttcaaaatcgtattttatttatatagaannnnnnnatttattgaacttgttttaccagccat 397  Q
    ||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  43995569 attaaaatgaaaaatggaatcactaaaagggtagtaggttcaaaatcgtattttatttatatagaatttttttatttattgaacttgttttaccagccat 43995668  T
Q  398 tgcaatggttctgattttttagacggatcaattccatgagattgcgatctttaatcttatttaagtcacaaattagagaactagtccatagatcaactct 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43995669 tgcaatggttctgattttttagacggatcaattccatgagattgcgatctttaatcttatttaagtcacaaattagagaactagtccatagatcaactct 43995768  T
Q  498 atttgaaacccatgtttctgtggtccctgcctagtccttgtgtcatattcctaactactataactcatgcataatttcccttgtctttgtcacctctttt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43995769 atttgaaacccatgtttctgtggtccctgcctagtccttgtgtcatattcctaactactataactcatgcataa-ttcccttgtctttgtcacctctttt 43995867  T
Q  598 tctagcctcgcaattaagggactttgagcattttaatggtgaggaattagaattacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgccc 697  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  43995868 tctagcctcgcaattaagggactttgagcattttaagggtaaggaattagaattacctaaatggttccgctcatttctaaagtaaaagtcgaaaataccc 43995967  T
Q  698 ctgtgtgagttaacttgcgctgctgagttaa 728  Q
    |||||||||||||||||||||||||||||||    
T  43995968 ctgtgtgagttaacttgcgctgctgagttaa 43995998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 821 - 903
Target Start/End: Original strand, 43996050 - 43996129
Alignment:
Q  821 gggcaacaaatataagacattccattaaagcggcaattcacaccatatcatctcaggttccattacaacttaccctcaatttg 903  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||    
T  43996050 gggcaacaaatataagacattccatt-aagcggcaattcacatcatatcatctca-gttccattacaac-taacctcaatttg 43996129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 752 - 793
Target Start/End: Original strand, 43996008 - 43996049
Alignment:
Q  752 gttataattctgcaaaaatcacattgaaatctcatcgtgagt 793  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  43996008 gttataattctgcaaaaatcacattgaaatctcaacgtgagt 43996049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 20073578 - 20073494
Alignment:
Q  150 ttgggaaaatggtgttgtgtttgcaatttg-gagtggtgcaggacataatttctca-aggaaatcaaccattaaacagttgattt 232  Q
    |||||||||||||| |||||||| |||||| || ||||||| ||||||||||| ||  | |||||||| |||||||| |||||||    
T  20073578 ttgggaaaatggtgctgtgtttgaaatttgagaatggtgcatgacataatttcacatcgaaaatcaacgattaaacatttgattt 20073494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 693
Target Start/End: Complemental strand, 37687379 - 37687335
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaat 693  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||    
T  37687379 attacccaaatggttccgctcatttccaaagtaaatgtccaaaat 37687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 23559050 - 23559000
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||| ||||||||||||||||||| | || ||||||||| |||||||||||    
T  23559050 attatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccct 23559000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 649 - 794
Target Start/End: Original strand, 4969886 - 4970037
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccctgtgtgagttaacttgcgctgc-tgagttaagtcacgttgcgtgagtt-a 746  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||  ||||||||||||||||| | |||||||||| |||||| |||| || |    
T  4969886 attacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagttaacttgcgctacgtgagttaagttacgttgtgtgaattaa 4969985  T
Q  747 ctcac----gttataattctgcaaaaatcacattgaaatctcatcgtgagtt 794  Q
    |||||    ||||||||||||||||||||||||| ||||| || ||||||||    
T  4969986 ctcacgttagttataattctgcaaaaatcacattaaaatcccaacgtgagtt 4970037  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 6162749 - 6162699
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  6162749 attacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 6162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 752 - 809
Target Start/End: Original strand, 33148926 - 33148982
Alignment:
Q  752 gttataattctgcaaaaatcacattgaaatctcatcgtgagttaactcatgttggttt 809  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||    
T  33148926 gttataattctgcaaaaatgacattgaaatc-caacgtgagttaactcacgttggttt 33148982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 699
Target Start/End: Original strand, 44833481 - 44833531
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||||||||||| | ||||| |||||||||||| |||||||||||    
T  44833481 attacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccct 44833531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 649 - 809
Target Start/End: Original strand, 37576554 - 37576720
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccctgtgtgagttaacttgcgctgc-tgagttaagtcacgttgcgtgagtta- 746  Q
    |||||||||| ||||  |||| |||| |||||||| ||| | | | |||||  ||||||||||||||||| | ||| |||||||||| |||||||||||     
T  37576554 attacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacgtgagttaacttgcgctacatgacttaagtcacgctgcgtgagttaa 37576653  T
Q  747 ctcacg----ttataattctgcaaaaatcacattgaaatctcatcgtgagttaactcatgttggttt 809  Q
    | ||||    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  37576654 cacacgctagttataattatgcaaaaatgacattgaaatctcaacgtgagttaactcatgttggttt 37576720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 699
Target Start/End: Original strand, 51718185 - 51718235
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  51718185 attacccagatggttctgctcattcccaaagtaaaagtcgaaaatgcccct 51718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 33164572 - 33164522
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||    
T  33164572 attacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccct 33164522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 34235771 - 34235737
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaa 683  Q
    |||||||||||||||||||||||| ||||||||||    
T  34235771 attacccaaatggttccgctcattcctaaagtaaa 34235737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 42807345 - 42807303
Alignment:
Q  180 gagtggtgcaggacataatttctcaaggaaatcaaccattaaa 222  Q
    |||||||||| ||||||||||| || |||||||||||||||||    
T  42807345 gagtggtgcatgacataatttcacatggaaatcaaccattaaa 42807303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 42817727 - 42817685
Alignment:
Q  180 gagtggtgcaggacataatttctcaaggaaatcaaccattaaa 222  Q
    |||||||||| ||||||||||| || |||||||||||||||||    
T  42817727 gagtggtgcatgacataatttcacatggaaatcaaccattaaa 42817685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 725 - 848
Target Start/End: Original strand, 5060917 - 5061045
Alignment:
Q  725 ttaagtcacgttgcgtgagtta-ctcac----gttataattctgcaaaaatcacattgaaatctcatcgtgagttaactcatgttg-gtttcatggtcac 818  Q
    |||||||||| ||||||||||| |||||    ||||||||||||||||||||||||||||||  ||  ||||||||||||| ||||  |||||| ||||     
T  5060917 ttaagtcacgctgcgtgagttaactcacactagttataattctgcaaaaatcacattgaaattccaatgtgagttaactcacgttgattttcatagtcag 5061016  T
Q  819 tggggcaacaaatataagacattccattaa 848  Q
    | || |||||||||||||||||| ||||||    
T  5061017 t-ggacaacaaatataagacattgcattaa 5061045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 699
Target Start/End: Complemental strand, 20379728 - 20379685
Alignment:
Q  656 aaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    ||||||||||||||||| | |||||||||||| |||||||||||    
T  20379728 aaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 20379685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 695
Target Start/End: Original strand, 5060859 - 5060905
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgc 695  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  5060859 attatccaaatggttccgctcattcccaaagtaaaagttgaaaatgc 5060905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 649 - 700
Target Start/End: Original strand, 1486 - 1537
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccctg 700  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1486 attacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctg 1537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 752 - 839
Target Start/End: Complemental strand, 34708743 - 34708656
Alignment:
Q  752 gttataattctgcaaaaatcacattgaaatctcatcgtgagttaactcatgttgg-tttcatggtcactggggcaacaaatataagaca 839  Q
    ||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||  ||| ||||||||| |||||||||    
T  34708743 gttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggctact-gggcaacaactataagaca 34708656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 655 - 710
Target Start/End: Complemental strand, 20686863 - 20686808
Alignment:
Q  655 caaatggttccgctcatttctaaagtaaaagtcgaaaatgcccctgtgtgagttaa 710  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  20686863 caaatgtttccgctcattcctaaagtaaaagtccaaaatgcccctgcgtgagttaa 20686808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 648 - 699
Target Start/End: Complemental strand, 37893076 - 37893025
Alignment:
Q  648 aattacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||||||||| |||||||| | |||||||||||| |||||||||||    
T  37893076 aattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccct 37893025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 35060962 - 35060912
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||||| ||||||||||||| |||||||| ||| |||||||||||    
T  35060962 attacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccct 35060912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Original strand, 17436053 - 17436094
Alignment:
Q  655 caaatggttccgctcatttctaaagtaaaagtcgaaaatgcc 696  Q
    |||||||||||||||||| | |||||||||||| ||||||||    
T  17436053 caaatggttccgctcattcccaaagtaaaagtctaaaatgcc 17436094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 697
Target Start/End: Original strand, 3792571 - 3792619
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgccc 697  Q
    ||||||||||| ||| |||||||||| |||||||||||| |||||||||    
T  3792571 attacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgccc 3792619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 809
Target Start/End: Original strand, 27039365 - 27039421
Alignment:
Q  753 ttataattctgcaaaaatcacattgaaatctcatcgtgagttaactcatgttggttt 809  Q
    |||||||||  ||||||| ||||||||||| || |||||||||||||| ||||||||    
T  27039365 ttataattcaacaaaaattacattgaaatcccaacgtgagttaactcacgttggttt 27039421  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 699
Target Start/End: Original strand, 28442939 - 28442983
Alignment:
Q  655 caaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||    
T  28442939 caaatggttccgctcattcccaaagtaaaagttgaaaatgcccct 28442983  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 650 - 712
Target Start/End: Original strand, 5602956 - 5603018
Alignment:
Q  650 ttacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccctgtgtgagttaact 712  Q
    |||||||||||| |  ||||||| | |||||||| | | ||||||||||||||||||||||||    
T  5602956 ttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaact 5603018  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 699
Target Start/End: Complemental strand, 33403177 - 33403143
Alignment:
Q  665 cgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||||||| ||||||||||||||||||||||||    
T  33403177 cgctcatttccaaagtaaaagtcgaaaatgcccct 33403143  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Original strand, 39650207 - 39650257
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    |||||| |||||||| |||||||| |||||||||| ||| |||||||||||    
T  39650207 attacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccct 39650257  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 45691115 - 45691065
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    ||||| ||||||||| |||||||| | |||||||||||| |||||||||||    
T  45691115 attactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccct 45691065  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 45691257 - 45691207
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    ||||| ||||||||| |||||||| | |||||||||||| |||||||||||    
T  45691257 attactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccct 45691207  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 699
Target Start/End: Complemental strand, 45691399 - 45691349
Alignment:
Q  649 attacccaaatggttccgctcatttctaaagtaaaagtcgaaaatgcccct 699  Q
    ||||| ||||||||| |||||||| | |||||||||||| |||||||||||    
T  45691399 attactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccct 45691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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