View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4839-Insertion-5 (Length: 815)

Name: NF4839-Insertion-5
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4839-Insertion-5
NF4839-Insertion-5
[»] chr8 (7 HSPs)
chr8 (443-815)||(1889814-1890186)
chr8 (637-815)||(1666241-1666420)
chr8 (195-285)||(1671233-1671323)
chr8 (715-815)||(1892888-1892989)
chr8 (353-414)||(33842234-33842296)
chr8 (382-439)||(36104391-36104449)
chr8 (353-414)||(6402682-6402744)
[»] chr2 (3 HSPs)
chr2 (656-797)||(5999420-5999562)
chr2 (52-105)||(5995944-5995997)
chr2 (382-439)||(42444272-42444330)
[»] chr4 (4 HSPs)
chr4 (348-438)||(14526034-14526124)
chr4 (348-437)||(48583900-48583989)
chr4 (373-429)||(2358812-2358869)
chr4 (348-397)||(6019874-6019923)
[»] chr5 (2 HSPs)
chr5 (348-438)||(41312898-41312988)
chr5 (386-429)||(21031959-21032002)
[»] scaffold0471 (1 HSPs)
scaffold0471 (382-439)||(2506-2564)
[»] chr1 (1 HSPs)
chr1 (353-414)||(11021566-11021628)
[»] scaffold0039 (1 HSPs)
scaffold0039 (353-414)||(102839-102901)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 443 - 815
Target Start/End: Complemental strand, 1890186 - 1889814
Alignment:
Q  443 aataaacatctgagattttattagttactgtcatgatcaagtcgcaggcgaaaacaaaacttagaatctgactctcttctcggacaagcttaacgtctcc 542  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1890186 aataaacatatgagattttattagttactgtcatgatgaagtcgcaggcgaaaacaaaacttagaatgtgactctcttcttggacaagcttaacgtctcc 1890087  T
Q  543 tttcaatggatcctttcagagacaattctatcttttgnnnnnnncgtctcctttcagagaagtacctaaatattctgaagaaaaagaaaatccgatagat 642  Q
    ||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1890086 tttcaatggatcctttcagagacaattctatctttt-aaaaaaacgtcacctttcagagaagtacttaaaaattctgaagaaaaagaaaatccgatagat 1889988  T
Q  643 aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccc 742  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1889987 aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttataacaacaaaattgagaaccttttccttctatccc 1889888  T
Q  743 taccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgtttagt 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1889887 taccaactatataattatcaactctacttgaatacatccaatttgtatagcctcttacaagcatgttgtttagt 1889814  T

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Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 637 - 815
Target Start/End: Original strand, 1666241 - 1666420
Alignment:
Q  637 atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttc 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1666241 atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctctaatttctaacaacaaaattgagaaccttttccttc 1666340  T
Q  737 tatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgtttagt 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1666341 tatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctcttacaagcatgttgtttagt 1666420  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 1671233 - 1671323
Alignment:
Q  195 ggaaactcaaaaacccaaacccaacgacggttaagaacgtaaagaaccccataaaaggcaccaacaagaaaacccctgaacacaattcttc 285  Q
    |||||||||| |||||||| |||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||| |||||    
T  1671233 ggaaactcaagaacccaaagccaacgacggttatcaacgtaaataaccccataataggcaccaacaagaaaacccctaaacccaactcttc 1671323  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 715 - 815
Target Start/End: Complemental strand, 1892989 - 1892888
Alignment:
Q  715 aaaattgagaaccttttccttctatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgttta 813  Q
    |||||||||||| |||||| || |||||| ||| ||||||||||||||||| |||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1892989 aaaattgagaactttttccctccatcccttccatctatataattatcaactatacttgacaacatcaaatttgtatagcctcttacaagcatgttgttta 1892890  T
Q  814 gt 815  Q
    ||    
T  1892889 gt 1892888  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 33842296 - 33842234
Alignment:
Q  353 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 414  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  33842296 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 33842234  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 36104449 - 36104391
Alignment:
Q  382 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 439  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  36104449 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 36104391  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 6402682 - 6402744
Alignment:
Q  353 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 414  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||| ||||||||||    
T  6402682 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcatgtgttgagt 6402744  T

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Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 656 - 797
Target Start/End: Complemental strand, 5999562 - 5999420
Alignment:
Q  656 atgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccctaccaact--ata 753  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||| |||  |  |||    
T  5999562 atgcaagtatgttcaacataatcactacagattaatatccatctcaaatttcggacaacaaaattgagaaacttttccttccatcccttccatattcata 5999463  T
Q  754 taattatcaactctacttgaatacatccaatttgtatagcctct 797  Q
    |  |||| |||||| |||| | |||||| |||||||||||||||    
T  5999462 ttgttataaactctgcttgca-acatccgatttgtatagcctct 5999420  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 5995997 - 5995944
Alignment:
Q  52 caaaggaatcctaatcttataattgaagaaaggaggacgctgcacacaaacaaa 105  Q
    |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||    
T  5995997 caaaggaatccccatcttaaaattgtagaaaggaggacgctgcacacaaacaaa 5995944  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 42444272 - 42444330
Alignment:
Q  382 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 439  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  42444272 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 42444330  T

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Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 348 - 438
Target Start/End: Original strand, 14526034 - 14526124
Alignment:
Q  348 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 438  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||    
T  14526034 aaagaaatccattaataaagtgaattgcgtgctgttgaacatgtcgtgtggttttcgtgtgttgaatttgtcgtgctgtataacagcgctc 14526124  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 48583900 - 48583989
Alignment:
Q  348 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgct 437  Q
    |||| |||||||| ||||||||||||  ||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  48583900 aaagaaatccatttataaagtgaattaagtgttgttcaacatgttgtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct 48583989  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 2358869 - 2358812
Alignment:
Q  373 tgggtgctgttcaacatgtcgtgtggctttcgtgtgtt-gagtttgtcgtgttgtata 429  Q
    |||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  2358869 tgggtgatgttcaacatgtcctgcggctttcgtgtgttagagtttgtcgtgttgtata 2358812  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 6019923 - 6019874
Alignment:
Q  348 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtg 397  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  6019923 aaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg 6019874  T

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Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 348 - 438
Target Start/End: Complemental strand, 41312988 - 41312898
Alignment:
Q  348 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 438  Q
    |||| |||| |||||||||||||||||||||  ||||||||  |  ||| || ||||||||||||||||||||||||||||||||||||||    
T  41312988 aaagaaatctattaataaagtgaattgggtgtcgttcaacaacttatgtagcattcgtgtgttgagtttgtcgtgttgtatagcagcgctc 41312898  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 21031959 - 21032002
Alignment:
Q  386 acatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtata 429  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||    
T  21031959 acatgtcgtgtggctttcgtgtgttaagttgttcgtgttgtata 21032002  T

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Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 2564 - 2506
Alignment:
Q  382 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 439  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  2564 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 2506  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 11021628 - 11021566
Alignment:
Q  353 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 414  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  11021628 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 11021566  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 102839 - 102901
Alignment:
Q  353 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 414  Q
    |||||||||||||||| |||  |||||| || ||||||||||| ||| |||||||||||||||    
T  102839 aatccattaataaagtaaatatggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 102901  T

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