View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4839-Insertion-7 (Length: 626)
Name: NF4839-Insertion-7
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4839-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 143 - 506
Target Start/End: Complemental strand, 6455870 - 6455507
Alignment:
| Q |
143 |
gccaaacacaaagcatttgtgtgaatattcgtgcctatacgttaacatagcttttaatagccctgtgttgaatttgaataatggtgctcaatactactat |
242 |
Q |
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| T |
6455870 |
gccaaacacaaagcatttgtgtgaatattcgtgcctatacgttaacatagcttttaatagccctgtgttgaatttgaataatggtgctcaatactactat |
6455771 |
T |
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| Q |
243 |
taatatactgagagaaaattagcatagnnnnnnnnnacctaagtgaattttgaagtggttgtggtaaatttggtctctcatcagctgaagaattagctcc |
342 |
Q |
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| T |
6455770 |
taatatactgagagaaaattagcatagtttttttttacctaagtgaattttgaagtggttgaggtaaatttggtctctcatcagctgaagaattagctcc |
6455671 |
T |
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| Q |
343 |
atgcaaaggaacaatattaatcccttgtgtctgcagtatcccatgacctgcaaaatttcattgctcttactttatcagacacattaacttaataattcat |
442 |
Q |
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| T |
6455670 |
atgcaaaggaacaatattaatcccttgtgtctgcagtatcccatgacctgcaaaatttcattgctcttactttatcagacacattaacttaataattcat |
6455571 |
T |
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| Q |
443 |
cacatcatcacttcaattgaaaatcataaagttatactatagtttctgtcaaatccaaatatct |
506 |
Q |
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| T |
6455570 |
cacatcataacttcaattgaaaatcataaagttatactatagtttctgtcaaatccaaatatct |
6455507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 539 - 626
Target Start/End: Complemental strand, 6455474 - 6455387
Alignment:
| Q |
539 |
ttgtgcaataattaatagaagaaattatgaaaatataattacctgctcctgatttgtcagtggtcttcactgttctatacatctgcat |
626 |
Q |
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| T |
6455474 |
ttgtgcaataattaatagaagaaattatgaaaatataattacctgctcctgatttgtcagtggtcttcactgttctatacatctgcat |
6455387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 6456007 - 6455966
Alignment:
| Q |
7 |
atctatgtactagtacacttcttgtcatagaatctcttaatc |
48 |
Q |
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| T |
6456007 |
atctatgtactagtacacttcttgtcatagaatctcttaatc |
6455966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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