View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4839_low_1 (Length: 310)
Name: NF4839_low_1
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4839_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 4554513 - 4554238
Alignment:
| Q |
20 |
cttagcaccttgtgtgacaatttagaaaatgtaaacaatatcaaatctcacacaacattcaacagtgtaagatattgtctagtataccaaagaaaacttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4554513 |
cttagcaccttgtgtgacaatttagaaaatctaaacaatatcaaatctaacacaacattcaacagtgtaagatattgtctagtataccaaagaaaacttt |
4554414 |
T |
|
| Q |
120 |
ttaccttaatggtttttaacgagtgttttctaagatggtgtaattttttctcaacttccaaaaccttctgtcttgagaacgagtcatcattgttagtacc |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4554413 |
ttaccttaatggtttttaatgagtgttttctaagatgctgtaattttttctcaacttccaaaaccttctgtcttgagaacgagtcatcattgttagtacc |
4554314 |
T |
|
| Q |
220 |
ataaactgtaatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4554313 |
ataaactgtaatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggt |
4554238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University