View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4839_low_3 (Length: 298)

Name: NF4839_low_3
Description: NF4839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4839_low_3
NF4839_low_3
[»] chr4 (4 HSPs)
chr4 (68-185)||(13294290-13294407)
chr4 (68-144)||(13276884-13276959)
chr4 (139-190)||(13292992-13293043)
chr4 (247-285)||(13293229-13293267)
[»] chr8 (1 HSPs)
chr8 (250-282)||(403901-403933)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 13294290 - 13294407
Alignment:
Q  68 aactatgatgtgaagatgtcgcaaacatgacaagtcgtttgttgtcattgtcatctccctaattgggatatataagttggatgtctgctcgtgccacctc 167  Q
    |||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13294290 aactttgatgtgaagatgtcgcaaacatgacaagttgtatgttgtcagtgtcatctccctaattgggatatataagttggatgtctgctcgtgccacctc 13294389  T
Q  168 tcaaaaaagacacacaac 185  Q
    ||| ||||| ||||||||    
T  13294390 tcagaaaaggcacacaac 13294407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 13276884 - 13276959
Alignment:
Q  68 aactatgatgtgaagatgtcgcaaacatgacaagtcgtttgttgtcattgtcatctccctaattgggatatataagt 144  Q
    |||| ||||||||||||||| |||||||||||||| || |||||| | ||||||||||| |||||||||||||||||    
T  13276884 aactttgatgtgaagatgtctcaaacatgacaagttgtatgttgttagtgtcatctccc-aattgggatatataagt 13276959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 13292992 - 13293043
Alignment:
Q  139 ataagttggatgtctgctcgtgccacctctcaaaaaagacacacaacgagtt 190  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  13292992 ataagttggatgtctgctcgtgccacctctcagaaaaggcacacaacaagtt 13293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 13293229 - 13293267
Alignment:
Q  247 catgaggcattcttccatagtcacaaacacaaatgagta 285  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13293229 catgaggcattcttccatggtcacaaacacaaatgagta 13293267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 403901 - 403933
Alignment:
Q  250 gaggcattcttccatagtcacaaacacaaatga 282  Q
    |||||||||||||||||| ||||||||||||||    
T  403901 gaggcattcttccatagttacaaacacaaatga 403933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University