View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-11 (Length: 368)
Name: NF4840-Insertion-11
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 34562925 - 34563141
Alignment:
| Q |
8 |
atttgagtatagtagtagtacattttttgttg--aacagatgagatgtgaaacttacacatactacgtgaagagaagagtatcgtgaattcaaaccattg |
105 |
Q |
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| T |
34562925 |
atttgagtatagtaacagtacattttttttttttaacagatgagatgtgaaacttacacatactatgcgaagagaagagtatcgtgaattcaaaccattg |
34563024 |
T |
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| Q |
106 |
ctcaacactcatatgtgggtcacaacattttatcatataatttggcgcattttcagaaatatcataatatttgtttatttatgctaacttgcacccacat |
205 |
Q |
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| T |
34563025 |
ctcaacactcagatgtgggtcacaacattttatcatataatttggcgcattttcagaaatatcataatatttatttatttatgctaacttgcacccacat |
34563124 |
T |
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| Q |
206 |
gaaactatgaagagtaa |
222 |
Q |
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|||||||| |||||||| |
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| T |
34563125 |
gaaactataaagagtaa |
34563141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 34563139 - 34563202
Alignment:
| Q |
303 |
taattaagatatatactcgcacgctcacac--acatttaaaatagcacatcaaattcataattt |
364 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34563139 |
taattaagatatatactcgcacgctcacactcacatttaaaatagcacatcaaattcataattt |
34563202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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