View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-2 (Length: 850)
Name: NF4840-Insertion-2
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 800; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 7 - 850
Target Start/End: Complemental strand, 35274104 - 35273264
Alignment:
| Q |
7 |
acttatcctatactagttgcaaagctaccgattgaatgaaccatgcattatctaattatggaaagttatctatcaacttcaactgtaacaacatttatgg |
106 |
Q |
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| T |
35274104 |
acttatcctatactagttgcaaagctaccgattgaatgaaccatgcattatctaattatggaaagttatctatcaacttcaactgtaacaacatttatgg |
35274005 |
T |
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| Q |
107 |
aacaaaaatatactacataacattatatgcatttgaaataatatacaccaaaagaagaaatcatatatacctgaagcatacgccatggatgatgagaagg |
206 |
Q |
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| T |
35274004 |
aacaaaaatatacgacataacattatatgcatttgaaataatatacaccaaaagaagaaatcatatatacctgaagcatacgccatggatgatgagaagg |
35273905 |
T |
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| Q |
207 |
atcagatagagcagatactgtcccttgaaaaattgagcttctctttgaagattcatcagtcttcaagcaatgtttaactctcattccagattgccaatta |
306 |
Q |
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| T |
35273904 |
atcagatagagcagatactgtcccttgaaaaattgagcttctctttgaagattcatcagtcttcaagcaatgtttaactctcattccagattgccaatta |
35273805 |
T |
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| Q |
307 |
atctgcattgctttctttacagcttcagcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcctatccg |
406 |
Q |
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| T |
35273804 |
atctgcattgctttctttacggcttcagcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccg |
35273705 |
T |
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| Q |
407 |
ccaattctgctgcctccataacggatttttccgttatcttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatc |
506 |
Q |
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| T |
35273704 |
ccaattctgctgcctccataacggatttttccgttatcttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatc |
35273605 |
T |
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| Q |
507 |
tttagaaattttcattaaaacgagggaatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagac |
606 |
Q |
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| T |
35273604 |
tttagaaattttcattaaaacgagggaatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagac |
35273505 |
T |
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| Q |
607 |
ccacggtaggtgtggcgaaagttccaaacaaaattgtggatgtccttgatcggaagtacctgagacggcattggggatgttagggtcaagtggcggggaa |
706 |
Q |
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| T |
35273504 |
ccacggtaggtgtggcgaaagttccaaacaaaattgtggatgtccttgatcggaagtacctgagacggcattggggatgtta-ggtcaagtggc-gggaa |
35273407 |
T |
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| Q |
707 |
tatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatccgactggggtgagagtcttgccagagaaaacaagcctatcaccacc |
806 |
Q |
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| T |
35273406 |
tatcaatttcgcgcattcagaaggtacggagaatgcaccgccattattagcatccgact-gggtgagagtcttgccagagaaaacaagcctatcaccacc |
35273308 |
T |
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| Q |
807 |
atgttcgttttcacgaacctcaggctcctgaggttcgtgaacac |
850 |
Q |
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| T |
35273307 |
atgttcattttcacgaacctcaggctcctgaggttcgtgaacac |
35273264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 17976343 - 17976462
Alignment:
| Q |
334 |
gcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcctatccgccaattctgctgcctccataacggatt |
433 |
Q |
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| T |
17976343 |
gcatcaacaacaaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatt |
17976442 |
T |
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| Q |
434 |
tttccgttatcttagcagca |
453 |
Q |
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| T |
17976443 |
tttctgttatcttagcagca |
17976462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 690 - 830
Target Start/End: Complemental strand, 17914470 - 17914332
Alignment:
| Q |
690 |
ggtcaagtggcggggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatccgactggggtgagagtcttgccagagaaa |
789 |
Q |
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| T |
17914470 |
ggtcaagtggcggg-aagattaattttgcgcattcgctaggcactgagaatgcaccgccgttattagcatcagac-ggagttagagttttgccagaggaa |
17914373 |
T |
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| Q |
790 |
acaagcctatcaccaccatgttcgttttcacgaacctcagg |
830 |
Q |
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| T |
17914372 |
acaaccttaaccccgtcatgttggtcttcacgaacctcagg |
17914332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 625
Target Start/End: Complemental strand, 17914644 - 17914534
Alignment:
| Q |
515 |
ttttcattaaaacgagggaatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggta |
614 |
Q |
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||||||| ||||| | ||| ||||||||||| | |||||| |||||| |||| |||||| || |||||||| ||||||||| ||||| ||||||||| |
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| T |
17914644 |
ttttcatgaaaactaaggagtcgccgccaatcagtttcttctcgtcaacaaactcactccaattggtggtgatcaggtgtcgcaagggagtcccacggta |
17914545 |
T |
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| Q |
615 |
ggtgtggcgaa |
625 |
Q |
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| T |
17914544 |
gacgtggcgaa |
17914534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 690 - 780
Target Start/End: Original strand, 17976689 - 17976777
Alignment:
| Q |
690 |
ggtcaagtggcggggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatccgactggggtgagagtcttg |
780 |
Q |
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| T |
17976689 |
ggtcaagtggcggg-aagattaatttcgcgcattccactggcacagagaatgcaccgccattgttagcatcaga-tggggtgagagtcttg |
17976777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 793
Target Start/End: Complemental strand, 8823388 - 8823324
Alignment:
| Q |
728 |
aggtacggagaatgcaccgccattattagcatccgactggggtgagagtcttgccagagaaaacaa |
793 |
Q |
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| T |
8823388 |
aggtacggagaatgcaccaccgttattagcatcaga-tagggttagagtctttccagaggaaacaa |
8823324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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