View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-3 (Length: 713)
Name: NF4840-Insertion-3
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-3 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 611; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 30818819 - 30818120
Alignment:
| Q |
8 |
aaatggagaataaaaccatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagct |
107 |
Q |
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| T |
30818819 |
aaatggagaataaaaccatatccaccaagagtgttcattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagct |
30818720 |
T |
|
| Q |
108 |
tttacaacaacaagaaggagtcaaagtaacacttgtcaccaccatttccaacttcaacaacatacctaaattactacctaattccattacagttgagacc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | | |||||||||||| |||||||| |
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| T |
30818719 |
tttacaacaacaagaaggagtcaaagtaacacttgtcaccaccatttccaactacaaaaacatacctaaattgccaaataattccattacgattgagacc |
30818620 |
T |
|
| Q |
208 |
atttctgatggttttgacaaaggtggagttgctgaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30818619 |
atttctgatggttttgacaaaggtggagttgctgaagcaaaggattttaaattgtatttgaataaattttggcaagttggtccacaatctcttgctcatc |
30818520 |
T |
|
| Q |
308 |
ttattaacaaccttaatgctagatcaaacgacgaccatgttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttgg |
407 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30818519 |
ttattaacaaccttaatgctagaa------acgaccatgttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttgg |
30818426 |
T |
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| Q |
408 |
aattgttggtgcttcttttctaactcaaaatcttgttatgaatagtatatactatcatgtatatttgggaaagttgaaacctccctttgttgaacaagag |
507 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30818425 |
aattgttggtgcttcttttctaacacaaaatcttgttatgaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgttgaacaagag |
30818326 |
T |
|
| Q |
508 |
attactcttcctgcacttcctcaattacaacctagggacatgccttctttctactttacctatgaacaagatccaacttttcttgatataggagtggccc |
607 |
Q |
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| T |
30818325 |
attactcttcctgcacttcctcaattacaacctagggacatgccttctttctactttacctatgaacaagatccaacttttcttgatataggagtggccc |
30818226 |
T |
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| Q |
608 |
aattctctaatattcacaaagctgattagatcctttacaattccttctttgagctagagaaagaggtaagtaagaatttgagataaattcacaatatata |
707 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30818225 |
aattctctaatattcacaaagctgattggatcctttgcaattccttctttgagctagagaaagaggtaagtaagaatttgagataaattcacaatatata |
30818126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 10 - 687
Target Start/End: Complemental strand, 30860826 - 30860155
Alignment:
| Q |
10 |
atggagaataaaaccatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttt |
109 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30860826 |
atggagaacaaaatcatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcgtt |
30860727 |
T |
|
| Q |
110 |
tacaacaacaagaaggagtcaaagtaacacttgtcaccaccatttccaacttcaacaacatacctaaattactacctaattccattacagttgagaccat |
209 |
Q |
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| T |
30860726 |
tacaacaacgagaaggagtcaaagtaacacttgtcaccaccatttccaactacaacaacatacctaaattgccacctaattccattacagttgagaccat |
30860627 |
T |
|
| Q |
210 |
ttctgatggttttgacaaaggtggagttgctgaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30860626 |
ttctgatggttttgacaaaggtggagttgctgaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatctt |
30860527 |
T |
|
| Q |
310 |
attaacaaccttaatgctagatcaaacgacgaccatgttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaa |
409 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30860526 |
attaacaaccttaatgctaga------aacgaccatgttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaagaaatttggaa |
30860433 |
T |
|
| Q |
410 |
ttgttggtgcttcttttctaactcaaaatcttgttatgaatagtatatactatcatgtatatttgggaaagttgaaacctccctttgttgaacaagagat |
509 |
Q |
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| T |
30860432 |
ttgttggtgcttcttttctaactcaaaatcttgctatgaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagat |
30860333 |
T |
|
| Q |
510 |
tactcttcctgcacttcctcaattacaacctagggacatgccttctttctactttacctatgaacaagatccaacttttcttgatataggagtggcccaa |
609 |
Q |
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| ||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||| |||||| || |
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| T |
30860332 |
ttctcttcctgcacttcctcaattacagcatagggacatgccttgtttctactttacatatgaagaagatccaacttttcttgatttagtagtggctcag |
30860233 |
T |
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| Q |
610 |
ttctctaatattcacaaagctgattagatcctttacaattccttctttgagctagagaaagaggtaagtaagaatttg |
687 |
Q |
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| T |
30860232 |
ttctctaatattcacaaagctgattggatcctttgtaattccttctttgagctagagaaagaggtaagtaagaatttg |
30860155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 347 - 676
Target Start/End: Complemental strand, 30856285 - 30855956
Alignment:
| Q |
347 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgttat |
446 |
Q |
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|||||||| ||||||||||| ||||| | |||||| | |||||||| ||| | |||||||| |||| | ||||| || ||||||||| || | | |
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| T |
30856285 |
ttgattgtgttatttatgatgcattctttccttggactcttgatgttgctaagagacttggaatttttggggtatctttcctcactcaaaatgttagtgt |
30856186 |
T |
|
| Q |
447 |
gaatagtatatactatcatgtatatttgggaaagttgaaacctccctttgttgaacaagagattactcttcctgcacttcctcaattacaacctagggac |
546 |
Q |
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|||||||| ||||| ||||| | ||||||| |||| | |||| ||| || ||||||||| | ||||| | ||||||||| |||||| ||||||| |
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| T |
30856185 |
taatagtatttactaccatgttcttgtgggaaaattgagagttccccttgatgtgcaagagatttcacttccagtgcttcctcaactacaacatagggac |
30856086 |
T |
|
| Q |
547 |
atgccttctttctactttacctatgaacaagatccaacttttcttgatataggagtggcccaattctctaatattcacaaagctgattagatcctttaca |
646 |
Q |
| |
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||||||||||| || || |||||| |||||||||| |||||||| ||| ||||| || || ||||| ||| |||||||||| |||||||| || |
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| T |
30856085 |
atgccttcttttgtattaacttatgaaaaagatccaacgtttcttgagctagcagtgggtcagttttctaacatttgtaaagctgattggatcctttgca |
30855986 |
T |
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| Q |
647 |
attccttctttgagctagagaaagaggtaa |
676 |
Q |
| |
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| T |
30855985 |
attccttccatgagctacaccaagaggtaa |
30855956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 30856577 - 30856503
Alignment:
| Q |
43 |
cattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttttacaacaa |
117 |
Q |
| |
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||||||||||| || |||||||||| || ||||||| |||||| ||| || ||||||||||||||||||||||| |
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| T |
30856577 |
cattgtttggtcttatcatttccagctcaaggtcacattaatcccatgctacaattctccaagcttttacaacaa |
30856503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 346 - 467
Target Start/End: Complemental strand, 30847964 - 30847843
Alignment:
| Q |
346 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgtt |
444 |
Q |
| |
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||||||||| |||||||| ||||||| | |||||| ||| | |||||||| ||| ||||||||||||||||| ||||| ||| ||||||||| | | |
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| T |
30847964 |
gttgattgtgttatttataattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgttg |
30847866 |
T |
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| Q |
445 |
atgaatagtatatactatcatgt |
467 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
30847865 |
gtgaatagtatttactatcatgt |
30847843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 467
Target Start/End: Complemental strand, 30841573 - 30841452
Alignment:
| Q |
346 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgtt |
444 |
Q |
| |
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||||||||| |||||||||||||||| | |||||| ||| | |||||||| ||| ||||||||||||||||| | ||| ||| ||||||||| ||| |
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| T |
30841573 |
gttgattgtgttatttatgattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgttacttatctcactcaaaat-atgtc |
30841476 |
T |
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| Q |
445 |
a-tgaatagtatatactatcatgt |
467 |
Q |
| |
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| |||||||||| ||||||||||| |
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| T |
30841475 |
agtgaatagtatttactatcatgt |
30841452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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