View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-4 (Length: 610)
Name: NF4840-Insertion-4
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 487
Target Start/End: Original strand, 37957819 - 37958299
Alignment:
| Q |
5 |
acatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaa |
104 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957819 |
acatggtctagtccagctctttcgatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaa |
37957918 |
T |
|
| Q |
105 |
ttgttgttttgcctgtccctcccatgccccatattcctatgagacgaacactctgcgacttgaggagcaacaagggttggattcgttcaatatgctcgtc |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957919 |
ttgttgttttgcctgtccctcccatgccccatattcctatgagacgaacactctgcgacttgaggagcaacaagggttggattcgttcaatatgctcgtc |
37958018 |
T |
|
| Q |
205 |
aattccaatcattccttcatactcacttaagacaaagctattcannnnnnncaaaatatcttctgcaatcttttctacaaggctgctttctggtctggca |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37958019 |
aattccaatcattccttcatactcacttaagacaaagctattcatttttttcaaaatatcttctgcaatcttttctacaaggctgctttctggtctgcca |
37958118 |
T |
|
| Q |
305 |
aataatgnnnnnnnnnnnnnnnnctgagccattagagactgtttgattttgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaa |
404 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37958119 |
aataatgaaaaaaaaaaaaaaaactgaaccattagagac--tttgattttgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaa |
37958216 |
T |
|
| Q |
405 |
gataataaaataaaatctgttttgaaatcatatttctaaaaatcatctccgagatgaagnnnnnnncgtgtttggaacaattg |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37958217 |
gataataaaataaaatctgttttgaaatcatatttctaaaaatcatctccgagatgaagaaaaaaacgtgtttggaacaattg |
37958299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 37929760 - 37929535
Alignment:
| Q |
13 |
tagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgtt |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| || || ||||||||||||| |||||||||||||| |
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| T |
37929760 |
tagtccagctctttctatttcttgttgagcatttagaatgatgcttttggaactgaactgagttgagaattgatgatagattgcattggcaattgttgtt |
37929661 |
T |
|
| Q |
113 |
ttgcctgtccctcccatgccccatattcctatgagacgaacactctgcgacttgaggagcaacaagggttggattcgttcaatatgctcgtcaattccaa |
212 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||| |||||| | ||||| |||||||||||||| ||||||| ||||||||||| |||||||| | |
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| T |
37929660 |
ttgcctatccctcccatgccccgtattcctatgattcgaacagtagccgactcgaggagcaacaaggattggattttttcaatatgcttttcaattccta |
37929561 |
T |
|
| Q |
213 |
tcattccttcatactcacttaagaca |
238 |
Q |
| |
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||||||||||||| |||||||||||| |
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|
| T |
37929560 |
tcattccttcataatcacttaagaca |
37929535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 604
Target Start/End: Original strand, 37958349 - 37958413
Alignment:
| Q |
537 |
agaatccaagaaactaaacatatttttactctctaagacaaagacacctctatcaaacaaagttaaaa |
604 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||| |
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|
| T |
37958349 |
agaatccaagaaactaaacata--tttactctctaaaataaa-acacctctatcaaacaaagttaaaa |
37958413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 44644653 - 44644770
Alignment:
| Q |
26 |
tctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctc |
125 |
Q |
| |
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||||||||||||| |||||||| | |||||| | ||||||| || ||||| | ||| |||| |||||||| |||||||||||||| ||| | |||| |
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| T |
44644653 |
tctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatatattgcactagcaattgttgttttccctattcctc |
44644752 |
T |
|
| Q |
126 |
ccatgccccatattccta |
143 |
Q |
| |
|
|||| ||||| ||||||| |
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| T |
44644753 |
ccataccccagattccta |
44644770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 49219757 - 49219678
Alignment:
| Q |
354 |
tgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttgaaatc |
433 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||| ||||||||| ||||| |||||| |
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| T |
49219757 |
tgtttttaaaaattgttttgtaaatcaatttcagaaaactatttttgagaagataactaaataaaatttgtttggaaatc |
49219678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 13032471 - 13032550
Alignment:
| Q |
354 |
tgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttgaaatc |
433 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||| | |||| ||| |||| |||||||||||||||| |||||| |
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|
| T |
13032471 |
tgtttttaaaaattgttttctaaatcattttcagaaaagtatttttgggaatataacaaaataaaatctgtttggaaatc |
13032550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 25721351 - 25721218
Alignment:
| Q |
13 |
tagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgtt |
112 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||| | ||||| || ||| |||| |||||||| | | ||||| ||||||| ||||||| ||| |
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| T |
25721351 |
tagtccaactctttttatttcttgttcaacatttagtatcatgctgctagaattgaattgagttgcaaacctgtgatatattgcacgggcaatttcggtt |
25721252 |
T |
|
| Q |
113 |
ttgcctgtccctcccatgccccatattcctatga |
146 |
Q |
| |
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|||||| | |||||||| ||||| |||||||||| |
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| T |
25721251 |
ttgcctattcctcccataccccaaattcctatga |
25721218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 34727847 - 34727887
Alignment:
| Q |
101 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
141 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34727887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 34731005 - 34731045
Alignment:
| Q |
101 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
141 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34731045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 18928879 - 18928839
Alignment:
| Q |
101 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
141 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
18928879 |
gcaattgttgttttgccgatccctcccataccccatattcc |
18928839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 34735604 - 34735640
Alignment:
| Q |
101 |
gcaattgttgttttgcctgtccctcccatgccccata |
137 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
34735604 |
gcaattgttgttttgccgatccctcccatgccccata |
34735640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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