View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4840-Insertion-5 (Length: 556)
Name: NF4840-Insertion-5
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-5 |
 |  |
|
| [»] chr6 (14 HSPs) |
 |  |
|
| [»] scaffold0003 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 4365661 - 4366209
Alignment:
| Q |
8 |
gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365661 |
gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca |
4365760 |
T |
 |
| Q |
108 |
caatgtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaataga |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365761 |
caatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaacatatcagacgcatcaataga |
4365860 |
T |
 |
| Q |
208 |
cttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4365861 |
cttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccattatggtgcaa |
4365960 |
T |
 |
| Q |
308 |
cctgttaccttccatatagctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtg |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365961 |
cctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtg |
4366060 |
T |
 |
| Q |
408 |
gattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgcaaacggtatggcattgttgtagaaaaacct |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4366061 |
gattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcattgttgtagaaaaacct |
4366160 |
T |
 |
| Q |
508 |
tgcaatcgcttgacatgcttcctctctcgaagtcttctcattcttttca |
556 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4366161 |
tgcaatcacttgacatgcttcctctctcgaagtcttctcatttttttca |
4366209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 556
Target Start/End: Original strand, 4370065 - 4370603
Alignment:
| Q |
12 |
gaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaat |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||| | | | ||| | || || ||||| ||||||||||| |
|
|
| T |
4370065 |
gaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaat |
4370164 |
T |
 |
| Q |
112 |
gtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttc |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4370165 |
ttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttc |
4370264 |
T |
 |
| Q |
212 |
aaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaacctg |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| | |||| | |||||||||||||||||||||||||||| |
|
|
| T |
4370265 |
aaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaa------ccgatccatcaaccattatggtgcaacctg |
4370358 |
T |
 |
| Q |
312 |
ttaccttccatatagctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggatt |
411 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4370359 |
ttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggctt |
4370458 |
T |
 |
| Q |
412 |
aaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgcaaacggtatggcattgttgtagaaaaaccttgca |
511 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4370459 |
aaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgca |
4370558 |
T |
 |
| Q |
512 |
atcgcttgacatgcttcctctctcgaagtcttctcattcttttca |
556 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
4370559 |
atcgcttgacatgcttcctctcttgatgtcttctcattcttttca |
4370603 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 542
Target Start/End: Original strand, 4360270 - 4360793
Alignment:
| Q |
13 |
aatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatg |
112 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| | |||||| |||||||||||| |||| | |
|
|
| T |
4360270 |
aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg |
4360369 |
T |
 |
| Q |
113 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4360370 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttca |
4360469 |
T |
 |
| Q |
213 |
aaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaacctgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||| |||| | || | || || || |||| ||||||||| |||||||||| |
|
|
| T |
4360470 |
aaaagaatgttccctttggactgttcagtaacaagtttagtatgttcct------cttgggaaagttagtaaatacatcgaccattatgctgcaacctgt |
4360563 |
T |
 |
| Q |
313 |
taccttccatatagctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggatta |
412 |
Q |
| |
|
| |||||| |||||||||||||| |||||| ||||| | |||||||||| ||| |||| |||||||||| || ||| ||| | |||||| ||| |
|
|
| T |
4360564 |
gatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatccaatatcaaagaaccccggtggctta |
4360663 |
T |
 |
| Q |
413 |
aatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaa |
512 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| || |||||||||||||| | | | | | || |||||||||||||| ||||||||||||||| |
|
|
| T |
4360664 |
aatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcactttctactatttcgaagggtatggcattgttcaagaaaaaccttgcaa |
4360763 |
T |
 |
| Q |
513 |
tcgcttgacatgcttcctctctcgaagtct |
542 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||| |
|
|
| T |
4360764 |
ccgctcgacatgcctcctcactcaaagtct |
4360793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 101 - 552
Target Start/End: Complemental strand, 5725547 - 5725102
Alignment:
| Q |
101 |
tccgtcacaatgtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaac--atatcagacgc |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||| || || ||||||| | |
|
|
| T |
5725547 |
tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtga-----acttatatcagctga |
5725453 |
T |
 |
| Q |
199 |
atcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccatt |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || ||||||||||| |||| |||| | ||| ||| | |||| |||||| |
|
|
| T |
5725452 |
ttcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctca---tcataccagtcatcgaccatt |
5725356 |
T |
 |
| Q |
299 |
atggtgcaacctgttaccttccatatagctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcat |
398 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5725355 |
atggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcga |
5725256 |
T |
 |
| Q |
399 |
aagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgcaaacggtatggcattgttgta |
498 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| ||||||||| |||| ||||||| ||||||||||||||||| |||| ||| | ||||| |||||||||| |
|
|
| T |
5725255 |
aagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgta |
5725156 |
T |
 |
| Q |
499 |
gaaaaaccttgcaatcgcttgacatgcttcctctctcgaagtcttctcattctt |
552 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
5725155 |
gaaaaaccttgcaatagcttgacatgcttcttctctcgaagtcttcttattctt |
5725102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 22 - 545
Target Start/End: Complemental strand, 4414640 - 4414131
Alignment:
| Q |
22 |
tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaaca |
121 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||| |||| | | || || |||||| ||||| || |||||||| ||||||||| |
|
|
| T |
4414640 |
tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca |
4414541 |
T |
 |
| Q |
122 |
ttttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaatg |
221 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
4414540 |
ttttcttccc-aacctcttctacaatttcatccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaatg |
4414442 |
T |
 |
| Q |
222 |
ttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaacctgttaccttcca |
321 |
Q |
| |
|
||| | | | | |||||||| ||||||||| |||| ||| | ||| ||| |||||||||||||||| ||| | ||| ||||| |
|
|
| T |
4414441 |
ttctcctggt--tattcactaagatatttagtatgttcctcttctttgggtcg--gtcc----atccatcaaccattatagtgtaccct------ttcca |
4414356 |
T |
 |
| Q |
322 |
tatagctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctct-aatctcatcataagacggtggattaaatcctac |
420 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||| | || |||||| |||| ||||| |||||||| |
|
|
| T |
4414355 |
tatagctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaa |
4414256 |
T |
 |
| Q |
421 |
gccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttga |
520 |
Q |
| |
|
|| |||||||||||||| | | ||||||| |||| |||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| |||| || |
|
|
| T |
4414255 |
cccatgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctcga |
4414156 |
T |
 |
| Q |
521 |
catgcttcctctctcgaagtcttct |
545 |
Q |
| |
|
| ||||| ||||| ||||||||| |
|
|
| T |
4414155 |
gaagcttcacctctcaaagtcttct |
4414131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 4377325 - 4377431
Alignment:
| Q |
116 |
acaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
4377325 |
acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccatcatatctgacgcatcaaccgacttcaaaa |
4377424 |
T |
 |
| Q |
216 |
agaatgt |
222 |
Q |
| |
|
||||||| |
|
|
| T |
4377425 |
agaatgt |
4377431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 4389919 - 4390111
Alignment:
| Q |
27 |
cacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaacattttc |
126 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||| |||||| |||| | | || ||| | | ||| | |||| |||||||||| || ||||||||||| |
|
|
| T |
4389919 |
cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc |
4390018 |
T |
 |
| Q |
127 |
ttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaa |
219 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4390019 |
ttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaa |
4390111 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 4384898 - 4385001
Alignment:
| Q |
116 |
acaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
4384898 |
acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatctgacgcatcaaccgactttaaaa |
4384997 |
T |
 |
| Q |
216 |
agaa |
219 |
Q |
| |
|
|||| |
|
|
| T |
4384998 |
agaa |
4385001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 4385257 - 4385307
Alignment:
| Q |
481 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
531 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
4385257 |
cggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4385307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 4390370 - 4390420
Alignment:
| Q |
481 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
531 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
4390370 |
cggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4390420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 4385103 - 4385178
Alignment:
| Q |
327 |
ctctatgttcctccaaagcttcacttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataaga |
402 |
Q |
| |
|
||||||| || |||||||||| | | |||||||||||| ||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
4385103 |
ctctatgatcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaaga |
4385178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 4377561 - 4377611
Alignment:
| Q |
355 |
caacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
405 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
4377561 |
caacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
4377611 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 4377696 - 4377737
Alignment:
| Q |
490 |
attgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
531 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
4377696 |
attgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4377737 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5725626 - 5725578
Alignment:
| Q |
22 |
tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatc |
70 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
5725626 |
tgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatc |
5725578 |
T |
 |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 15658753 - 15658632
Alignment:
| Q |
113 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca |
212 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| | ||| |||| | || || ||||| | |||||||||||| | |
|
|
| T |
15658753 |
tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaattttatcagcagttttggtaatgtcagatggatcaatagacttta |
15658654 |
T |
 |
| Q |
213 |
aaaagaatgttccctttggact |
234 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
15658653 |
aaaaaaaagttccctttggact |
15658632 |
T |
 |
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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 245811 - 245861
Alignment:
| Q |
115 |
gacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa |
165 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
245811 |
gacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
245861 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 244686 - 244638
Alignment:
| Q |
117 |
caacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa |
165 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||| ||||||||||| |
|
|
| T |
244686 |
caacattttcttctccaatcttttcaacaacatcatcaatcatcttaaa |
244638 |
T |
 |
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