View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-6 (Length: 496)
Name: NF4840-Insertion-6
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 37 - 496
Target Start/End: Original strand, 48643371 - 48643827
Alignment:
| Q |
37 |
tacataaccaacaatattttcttctacttagcaaatattcttcagctcgccgtgtttatagtttctgacattaaaggtacggtgttccctggaattatgc |
136 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48643371 |
tacacaaccaacaatattttct---acttagcaaatattcttcagctcgccgtgtttatagtttctgacattaaaggtacggtgttccctggaattatgc |
48643467 |
T |
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| Q |
137 |
gacccagaatataaatactagtactagtaggatatataattaattaattttatttcttgtcagtttgcttttcctttaacatggataaaacgttaattac |
236 |
Q |
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| T |
48643468 |
gacccagaatataaatactagtactagtagggtatataattaattaattttatttcttgtcagtttgcttttcctttaacatggataaaacgttaattac |
48643567 |
T |
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| Q |
237 |
aggttaattacaagacatgcatgttttgtgctggttgtcttgtctatatatactctataatgatcacttaaggaaaactctttgtatatattaatgtctt |
336 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48643568 |
aggctaattacaagacatgcatgttttgtgctggttgtcttgtctatatttactctataatgatcacttaaggaaaactctttgtatatattaatgtctt |
48643667 |
T |
|
| Q |
337 |
ctttttcataccatatacaaggcattgctttgcttgcagatatatagattaagttcatttannnnnnnagatccattattcttttctccctcttgttaga |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48643668 |
ctttttcataccatatacaaggcattgctttgcttgcagatatatagattaagttcatttatttttttagatccattattcttttctccctcttgttaga |
48643767 |
T |
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| Q |
437 |
ttctatttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgtta |
496 |
Q |
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| T |
48643768 |
ttctatttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgtta |
48643827 |
T |
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