View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4840-Insertion-7 (Length: 494)
Name: NF4840-Insertion-7
Description: NF4840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4840-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 26531659 - 26531852
Alignment:
| Q |
39 |
aaatcaattgactatggttctaatgagaacacctcttaaatcaaggccttaaaaatgtatatgatatgatggtcttgccattgatgctatcagtccgaaa |
138 |
Q |
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| T |
26531659 |
aaatcaattgactatggttctaatgagaacacctcttaaattaaggccttaaaaatgtatatgatatgatggtcttgccattgatgctatcagtccgaaa |
26531758 |
T |
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| Q |
139 |
tagaatttagggtccaaaagtgttgaccgaaaataaaaacgaaagttagtaattttataaggactaaaagcataattaacctacattttaatca |
232 |
Q |
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| T |
26531759 |
tagaatttggggaccaaaaatgttgacagaaaataaaaacaaaagttagtaatattataaggactaaaaacataattaacctacatttttatca |
26531852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 389 - 494
Target Start/End: Original strand, 26531913 - 26532018
Alignment:
| Q |
389 |
gaaaatgaaaatgatcaagtaaaaagactaaactagttaacatgatcttttcctacatggccacaaaattacaaagcataatacaacccaacaaaattaa |
488 |
Q |
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| T |
26531913 |
gaaaatgaaaatgattaagtaaaaagactaaactagttaacatgatcctttcctacattgccacaaaattacaaagcataatacaacccaacaaaattaa |
26532012 |
T |
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| Q |
489 |
gatatt |
494 |
Q |
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| T |
26532013 |
gatatt |
26532018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 26531792 - 26531887
Alignment:
| Q |
291 |
taaaaacaaaagttagtaatattataacgactaaaaacataattaacctacatttttatcatttcatacgcataagattgcagtcaatactaacaa |
386 |
Q |
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| T |
26531792 |
taaaaacaaaagttagtaatattataaggactaaaaacataattaacctacatttttatcatttcatacgcataagattgcagtcaataataacaa |
26531887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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