View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-1 (Length: 980)
Name: NF4841-Insertion-1
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 863; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 8 - 980
Target Start/End: Complemental strand, 43617415 - 43616421
Alignment:
| Q |
8 |
ctaactgttaaagttatcagagtgtgcagtcgaaaggtgcgtaaaattagcagagagcacattggaagaaagaaggtgcgtaaaattagcatagagcaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617415 |
ctaactgttaaagttatcagagtgtgcagtcgaaaggtgcgtaaaattagcagagagcacattggaagaaagaaggtgcgtaaaattagcatagagcaca |
43617316 |
T |
|
| Q |
108 |
ttgtaaaggaggtgcatgaaattagcggagagcgcattgga---------------------aaggagctgtatgaaatttacgaagagcgcgttgaaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
43617315 |
ttgtaaaggaggtgcatgaaattagcggagagcgcattggataggagctgtatgaaattggaaaggagctgtatgaaatttatgaagagcgcgttgaaaa |
43617216 |
T |
|
| Q |
187 |
ggaggggtataaaattagcagagagcgcattgaaaaggaggtgcattataattattctcttttttgttatggataacttttacatttatgagtttatgac |
286 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43617215 |
ggaggggtataaaattagcagaaagcgcattgaaaaggaggtgcattataattattctcttttttgttatggataacttttacatttacgagtttatgac |
43617116 |
T |
|
| Q |
287 |
aagcttgctcatatttttggttgtactcaaaatttagccatttatgctcttatgtttatggctttgtctgtaggttgatctaatgatatctggaaatcaa |
386 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617115 |
aagcttgctcatatttttggttgtactgaaaatttagccatttatgctcttatgtttatggctttgtctgtaggttgatctaatgatatctggaaatcaa |
43617016 |
T |
|
| Q |
387 |
cctgtcaaagcaatgacttatatttgtgagcttacactatttcagacaaaggaggtgtataaaattagcaaagagcgcattggaaaggaggtgcattata |
486 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617015 |
cctgtcaaagcaatgacttatatttgtgggcttacactatttcagacaaaggaggtgtataaaattagcaaagagcgcattggaaaggaggtgcattata |
43616916 |
T |
|
| Q |
487 |
attattctcttttttgttacggataacatttacatttacgagtttatgacaagcttgctcatatttttggctgtactgaaaatttagctatttatgctct |
586 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43616915 |
attattctcttttttgttacggataacattcacatttacgagtttatgacaagcttgctcatatttttggctgtactgaaaatttagccatttatgctct |
43616816 |
T |
|
| Q |
587 |
tatgtttatgctttgtctgtaggttgatctaatgataactggaaatcaacctgtcaaagcaatgacttatatttgtgagcttacactatttcagactgtc |
686 |
Q |
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| T |
43616815 |
tatgtttatgctttgtctgtaggttgatctaatgataactggaaatcaacctgtcaaagcaatgacttatatttgtgagcttacactatttcagactgtc |
43616716 |
T |
|
| Q |
687 |
tttattcttcctgagcatgaacttgtcatttcggatgaatgtgaaaggtataagccgtagataaattcataaatgtgtcttggatgaatgtgcaaatcca |
786 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43616715 |
tttactcttcctgagcatgaacttgtcatttcggatgaatgtgaaaggtataagccgtagataaattcataaatgtgttttggatgaatgtgcaaatcca |
43616616 |
T |
|
| Q |
787 |
tcattgatg-attaatgaataacattcacgtcttcagcacatagtaagagttattctaatagtttattgttgccccaattattaggataaagtgggccta |
885 |
Q |
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| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43616615 |
ttattaatgaattaatgaataacattcacgtcttcagcacatagtaagagttattctaatagtttattgttgccccaattattagaataaagtgggccta |
43616516 |
T |
|
| Q |
886 |
catcgagttaataattgtgccatgaatacctcttatctatctgatagtatttagagcctccattctctatttcttccggtcctacctatatccta |
980 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
43616515 |
catcgagttaataattgtgccatgaatacctcttatctatctgatagtatttagagcctccattctctatttcttccgttcctacttatatccta |
43616421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 561 - 764
Target Start/End: Complemental strand, 43647843 - 43647636
Alignment:
| Q |
561 |
actgaaaatttagctatttatgctcttatgtttatg-ctttgtctgtaggttgatctaatgataactggaaatcaacctgtcaaagcaatgacttatatt |
659 |
Q |
| |
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||||||||||| || ||||||| ||| ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43647843 |
actgaaaatttggccatttatgttctcatgtttatgtctttgtctgtaggttgatttaatgatgtctggaaatcaacctgtcaaagcaatgacttatatt |
43647744 |
T |
|
| Q |
660 |
tgtgagcttacactatttcagactgtctttattcttc---ctgagcatgaacttgtcatttcggatgaatgtgaaaggtataagccgtagataaattcat |
756 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||| | ||| |||||||||| |
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| T |
43647743 |
tgtgagcttacactattctggactgtctttactcttcctgctgagcatgaacctgtcatttcggatgggtgtgaaaggtatatgttgtacataaattcat |
43647644 |
T |
|
| Q |
757 |
aaatgtgt |
764 |
Q |
| |
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||||||| |
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| T |
43647643 |
taatgtgt |
43647636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 43647839 - 43647727
Alignment:
| Q |
315 |
aaaatttagccatttatgctcttatgtttatggctttgtctgtaggttgatctaatgatatctggaaatcaacctgtcaaagcaatgacttatatttgtg |
414 |
Q |
| |
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||||||| |||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43647839 |
aaaatttggccatttatgttctcatgtttatgtctttgtctgtaggttgatttaatgatgtctggaaatcaacctgtcaaagcaatgacttatatttgtg |
43647740 |
T |
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| Q |
415 |
agcttacactatt |
427 |
Q |
| |
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||||||||||||| |
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| T |
43647739 |
agcttacactatt |
43647727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 828 - 878
Target Start/End: Complemental strand, 49978679 - 49978629
Alignment:
| Q |
828 |
agtaagagttattctaatagtttattgttgccccaattattaggataaagt |
878 |
Q |
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||||||||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
49978679 |
agtaagagttactctaatagtttatagttgcctcaattattaggataaagt |
49978629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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