View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-10 (Length: 540)
Name: NF4841-Insertion-10
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 4860100 - 4860391
Alignment:
| Q |
7 |
aaaattctcatatatttctgtttttatatcacatcattgataaattttctcttaattttttctttcccatgtctcttgttgtgatataaacctcaccgtt |
106 |
Q |
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| T |
4860100 |
aaaattctcatatatttctctttttatatcacatcattgataaattttctcttaattttttctttcccatgtctcttgttttgatataaacctcaccgtt |
4860199 |
T |
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| Q |
107 |
gaactattttactctcattttttatattaaaaactcatctcataacacatgaaag-nnnnnnnnnttgtgtgaatttatcctccttaattaaaatt--ta |
203 |
Q |
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| T |
4860200 |
gaactattttactctcattttttatattaaaaactcatctcataacacatgaaagaaaaaaaatattgtgtgaatttatcctccttaattaaaatttata |
4860299 |
T |
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| Q |
204 |
cagccatacaagatatcaacgcaaatattttccaagaaacgaattaacaatgctatattaaaaccctttacgggattgcttatttgtgagga |
295 |
Q |
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| T |
4860300 |
cagccatacaagatatcaacgcaaatattttccaagaaacaaattaacaatgctatattaaaaccctttacgggattgcttatttgtgagga |
4860391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 401 - 540
Target Start/End: Original strand, 4860479 - 4860618
Alignment:
| Q |
401 |
attgttttttcctaaaaagaaattatgcattgtttttatttgtatttcattttcttaacgataatttcatttcaagtgattagttcaataatttatataa |
500 |
Q |
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| T |
4860479 |
attgttttttcctaaaaagaaattatgcattgtttttatatgtatttcattttcttaacaataatttcatttcaagtgattagttcaataatttatataa |
4860578 |
T |
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| Q |
501 |
ttgaattatctaaattgatgt-cataagaactgagatttaa |
540 |
Q |
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| T |
4860579 |
ttgaattatttaaa-taatatacataagaactgagatttaa |
4860618 |
T |
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