View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-11 (Length: 498)
Name: NF4841-Insertion-11
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 12 - 498
Target Start/End: Original strand, 865700 - 866184
Alignment:
| Q |
12 |
ctagaagaattgaattgaacacatttcatgatgtatcatttcttcatcatgtaggagatgattgtgtatctatacaaactggatgttccaatatattggt |
111 |
Q |
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| T |
865700 |
ctagaagaattgaattgaacacatttcataatgcatcactttttcatcatgtaggggatgattgtgtgtctatacaaactggttgttctaacatattggt |
865799 |
T |
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| Q |
112 |
gcacaatgttaattgtggacctggtcatggaattagtatcggaagtcttggaaaagagaacaccaaagcctgtgtttccaatgtcaccgttcgtgatatc |
211 |
Q |
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| T |
865800 |
gcacaatgttaattgtggaccaggtcatggaattagtatcggaagtctcggaaaagagaacaccaaagcttgtgtttccaatgtcaccgttcgcgatgtt |
865899 |
T |
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| Q |
212 |
actctccagaacaccttgactggtgtgagaatcaaaacatggcaggtaaagttatagggaaaattcagtttcaatgatacttttgttaatcaatctcctt |
311 |
Q |
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| T |
865900 |
actctccagaacaccttgactggggtgagaatcaaaacatggcaggtaaagttctaaggaaaattccatttaaatgatactttt-ttaatcaaacacttt |
865998 |
T |
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| Q |
312 |
aagaaagaacaag-taaaacattttcat-acaatcattattaagttttgcttatatnnnnnnnnnttaataatcgagttttcactaaaaaaggttggtcc |
409 |
Q |
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| T |
865999 |
aagaaaaaacaagttaaaacattttcataataatcattattaagttttgcttatat---aaaaaattaatagttgagtttttactaaaaaaggttggtcc |
866095 |
T |
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| Q |
410 |
aatcgacgaacaattaaa-ataatgtattcgggttttgtaaatagacaatatacgcgctagaaaaaacattgttctcttataccgatgca |
498 |
Q |
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| T |
866096 |
aattgaccaacaattaaagatattgtattcgagttttgtaaatagagaatatactcgccag-aaaaacattgttctcttatagcgatgca |
866184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 14738525 - 14738647
Alignment:
| Q |
64 |
aggagatgattgtgtatctatacaaactggatgttccaatatattggtgcacaatgttaattgtggacctggtcatggaattagtatcggaagtcttgga |
163 |
Q |
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| T |
14738525 |
aggagatgattgcatttctatacaaactggatgctcaaatgtatatgtacacaatgtcaactgtggtccgggacatggaatcagcattggaagtttagga |
14738624 |
T |
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| Q |
164 |
aaagagaacaccaaagcctgtgt |
186 |
Q |
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| T |
14738625 |
aaagataacaccagagcctgtgt |
14738647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 42844324 - 42844364
Alignment:
| Q |
116 |
aatgttaattgtggacctggtcatggaattagtatcggaag |
156 |
Q |
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| T |
42844324 |
aatgtgaattgtggacctggtcatggaattagtgtcggaag |
42844364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 261
Target Start/End: Complemental strand, 27296148 - 27295951
Alignment:
| Q |
64 |
aggagatgattgtgtatctatacaaactggatgttccaatatattggtgcacaatgttaattgtggacctggtcatggaattagtatcggaagtcttgga |
163 |
Q |
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| T |
27296148 |
aggagatgattgtatttctatacaaactggatgctcaaatgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtctagga |
27296049 |
T |
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| Q |
164 |
aaagagaacaccaaagcctgtgtttccaatgtcaccgttcgtgatatcactctccagaacaccttgactggtgtgagaatcaaaacatggcaggtaaa |
261 |
Q |
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| T |
27296048 |
aaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacatggcaggtaaa |
27295951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 11532436 - 11532474
Alignment:
| Q |
124 |
ttgtggacctggtcatggaattagtatcggaagtcttgg |
162 |
Q |
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| T |
11532436 |
ttgtggtcctggtcatggaattagtgtcggaagtcttgg |
11532474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 42943836 - 42943877
Alignment:
| Q |
124 |
ttgtggacctggtcatggaattagtatcggaagtcttggaaa |
165 |
Q |
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| T |
42943836 |
ttgtggaccgggacatggaattagtgtcggaagtcttggaaa |
42943877 |
T |
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