View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-12 (Length: 319)
Name: NF4841-Insertion-12
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-12 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 42854721 - 42855030
Alignment:
| Q |
11 |
attgcagtggtatttgtgacttgcttgacaacattgaggtccgtttctctgtcttccgctatatagatattgcttaacttagaacttatgaggccattct |
110 |
Q |
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| T |
42854721 |
attgcagtggtatttgtgacttgcttgacaacattgaggtccgtttctgcatcttccgctatatagatattgcttaacttagaacttgtgaggccattct |
42854820 |
T |
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| Q |
111 |
atcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattagattactctctgtcaatggatgttcgacctgcttttgttttttgactc |
210 |
Q |
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| T |
42854821 |
atcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattagattactctctgtcaatggatgttcgacctgcctttgttttttgactc |
42854920 |
T |
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| Q |
211 |
agatacaatataatatatgcataagatatat-atggtattctttctcattcttgtcgatccgcaataatagatattttacattttaacttccagctttgt |
309 |
Q |
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| T |
42854921 |
agatacaatataatatgtgcataagatatatcatggtattctttctcattcttgtcgatccgcaataatagatattttacattttaacttccagctttgt |
42855020 |
T |
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| Q |
310 |
gatcttaatg |
319 |
Q |
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|||||||||| |
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| T |
42855021 |
gatcttaatg |
42855030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 54 - 319
Target Start/End: Original strand, 42848208 - 42848485
Alignment:
| Q |
54 |
tttctctgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtcctta |
153 |
Q |
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| T |
42848208 |
tttctttgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtcctta |
42848307 |
T |
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| Q |
154 |
agtcaattagattactctctgtcaatggatgttcgacctgc-------ttttgttttttgactcagatacaatataatata--tgcataagatatat--- |
241 |
Q |
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| T |
42848308 |
agtcaattagattactctctgtctacgggtgttccacctgctttgttttttttttttttgactctgatacaatataatatatgtgcatgagatgtatatc |
42848407 |
T |
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| Q |
242 |
atggtattctttctcattcttgtcgatccgcaataatagatattttacattttaacttccagctttgtgatcttaatg |
319 |
Q |
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| T |
42848408 |
atgatattctttttcattcttgtcgattagcaataataaatactttacattttaccttccagctttgtgatcttaatg |
42848485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 42856366 - 42856668
Alignment:
| Q |
15 |
cagtggtatttgtgacttgcttgacaacattgaggtccgtttctctgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatca |
114 |
Q |
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| T |
42856366 |
cagtggtatttacgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtca |
42856465 |
T |
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| Q |
115 |
aagttattgattaggatcactgcagtatatatgt----ccttaagtcaattagattactctctgtcaatggatgttcgacctgcttttgttttttgactc |
210 |
Q |
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| T |
42856466 |
aagttattgattaggatcactgcagtatatatatatatcattgagtcaattacattactctttgcctattattgttccacctcctttggtttcttgattg |
42856565 |
T |
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| Q |
211 |
agatacaatataatatatgcataagatatat-atggtattctttctcattcttgtcgatccgcaataatagatattttacattttaac-ttccagctttg |
308 |
Q |
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| T |
42856566 |
agatacaatataataagtgcgtaagatatgtcatgatattctttttcgatct--------aacaataatagatattttacattttacctttccagctttg |
42856657 |
T |
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| Q |
309 |
tgatcttaatg |
319 |
Q |
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| T |
42856658 |
tgatcttaatg |
42856668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 42860433 - 42860564
Alignment:
| Q |
15 |
cagtggtatttgtgacttgcttgacaacattgaggtccgtttctctgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatca |
114 |
Q |
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||||||||||| ||||||||||||||||||||| | ||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||| ||| |
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| T |
42860433 |
cagtggtatttacgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtca |
42860532 |
T |
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| Q |
115 |
aagttattgattaggatcactgcagtatatat |
146 |
Q |
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| T |
42860533 |
aagttattgattaggatcactgcagtatatat |
42860564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 42852838 - 42853090
Alignment:
| Q |
23 |
tttgtgacttgcttgacaacattgaggtccgtttctctgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttatt |
122 |
Q |
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|||| |||||||||||| |||||||| | ||||| | ||| | ||| ||||| ||||||||| ||| |||||| | |||||||||||||||||||| |
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| T |
42852838 |
tttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttatt |
42852937 |
T |
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| Q |
123 |
gattaggatcactgcagtatatatgtc----cttaagtcaattagattactctctgtcaatggatgttcgacctgcttt--tgttttttgactcagatac |
216 |
Q |
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| T |
42852938 |
gatttggattactacagtacatatgtcatgaattaagtcgattagattaatctctgtctatgtgtgttccacatgctttggtttttttttacgaagatac |
42853037 |
T |
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| Q |
217 |
aatataatatatgcataagatatat-atggtattctttctcattcttgtcgat |
268 |
Q |
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| T |
42853038 |
gatataatatgtgcataagatatatcacgttattctttttcattcttgtcgat |
42853090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 42860697 - 42860745
Alignment:
| Q |
272 |
caataatagatattttacattttaac-ttccagctttgtgatcttaatg |
319 |
Q |
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| T |
42860697 |
caataatagatattttacattttacctttccagctttgtgatcttaatg |
42860745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 27095 - 27202
Alignment:
| Q |
159 |
attagattactctctgtcaatggatgttcgacctgcttttgtttttt-gactcagatacaatataatatatgcataagatatat-atggtattctttctc |
256 |
Q |
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| T |
27095 |
attagattactcactgtctattagtgttccacctgctttggtttttttgtccgagatacaatgtaatatgtgcataagatatatcgtggtattctttttc |
27194 |
T |
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| Q |
257 |
attcttgt |
264 |
Q |
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|||||||| |
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| T |
27195 |
attcttgt |
27202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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