View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841-Insertion-13 (Length: 488)

Name: NF4841-Insertion-13
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841-Insertion-13
NF4841-Insertion-13
[»] chr5 (1 HSPs)
chr5 (5-488)||(41267049-41267530)


Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Original strand, 41267049 - 41267530
Alignment:
Q  5 acatatcccacatgcatttgccgacagtatatgtgttccttgatttgaatcaatgatcaaagttcaaataatatagccaacaaactacacatcatttgct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41267049 acatatcccacatgcatttgccgacagtatatgtgttccttgatttgaatcaatgatcaaagttcaaataatatagccaacaaactacacatcatttgct 41267148  T
Q  105 tgatcttgactctcctatccaaacgattaaattatttgaatctaaccctttagggaacaaattttggtttagctttagttttcaattttataatttaaca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  41267149 tgatcttgactctcctatccaaacgattaaattatttgaatctaaccctttagggaacaaattttggtttagctttagttttcaatttta--atttaaca 41267246  T
Q  205 tgtggaaagggatttgcagttttttacccatcactcatgttgattttgtatggtgaagagtaacattgagttggtacttgttacaccacttttcactttc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41267247 tgtggaaagggatttgcagttttttacccatcactcatgttgattttgtatggtgaagagtaacattgagttggtacttgttacaccacttttcactttc 41267346  T
Q  305 aaatcttacctagcttaaaaatagatagcaaagttatcataataattcttttaattaacaaacaaatattagaataatcattttgttacgaaatctttgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41267347 aaatcttacctagcttaaaaatagatagcaaagttatcataataattcttttaatcaacaaacaaatattagaataatcattttgttacgaaatctttgt 41267446  T
Q  405 ccaatagtgaataattcagtgacaaaatcatcaacctcacactcacaactttaaaaagtctaaaagttcaatttgcaaccaatt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41267447 ccaatagtgaataattcagtgacaaaatcatcaacctcacactcacaactttaaaaagtctaaaagttcaatttgcaaccaatt 41267530  T

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