View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841-Insertion-14 (Length: 457)

Name: NF4841-Insertion-14
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841-Insertion-14
NF4841-Insertion-14
[»] chr8 (13 HSPs)
chr8 (151-435)||(3112186-3112470)
chr8 (4-89)||(3112532-3112617)
chr8 (348-397)||(4560603-4560652)
chr8 (336-396)||(14926890-14926950)
chr8 (347-395)||(26479888-26479936)
chr8 (213-259)||(29198487-29198533)
chr8 (347-393)||(41475031-41475077)
chr8 (215-252)||(32691750-32691787)
chr8 (215-252)||(33714140-33714177)
chr8 (347-395)||(3092543-3092591)
chr8 (339-391)||(8060775-8060827)
chr8 (347-391)||(11059648-11059692)
chr8 (344-396)||(18331816-18331868)
[»] chr5 (9 HSPs)
chr5 (215-252)||(7512206-7512243)
chr5 (215-252)||(7512450-7512487)
chr5 (215-253)||(7512126-7512164)
chr5 (344-396)||(36796623-36796675)
chr5 (215-252)||(7512285-7512322)
chr5 (216-253)||(43208288-43208325)
chr5 (219-255)||(2039861-2039897)
chr5 (345-393)||(5377114-5377162)
chr5 (347-395)||(17368775-17368823)
[»] chr6 (4 HSPs)
chr6 (215-252)||(10335391-10335428)
chr6 (347-396)||(8010459-8010508)
chr6 (215-256)||(10522954-10522995)
chr6 (219-251)||(8148131-8148163)
[»] chr2 (9 HSPs)
chr2 (347-396)||(40759262-40759311)
chr2 (347-394)||(1830143-1830190)
chr2 (347-394)||(8017538-8017585)
chr2 (351-396)||(9530646-9530691)
chr2 (347-396)||(22878200-22878249)
chr2 (219-252)||(26787753-26787786)
chr2 (337-386)||(30331863-30331912)
chr2 (215-252)||(32843720-32843757)
chr2 (216-252)||(22131269-22131305)
[»] chr1 (3 HSPs)
chr1 (347-396)||(33976280-33976329)
chr1 (346-396)||(6292594-6292644)
chr1 (351-396)||(6074565-6074610)
[»] chr4 (9 HSPs)
chr4 (219-254)||(2976705-2976740)
chr4 (347-398)||(51414251-51414302)
chr4 (215-252)||(683059-683096)
chr4 (219-252)||(8457936-8457969)
chr4 (215-252)||(9988714-9988751)
chr4 (347-396)||(32071965-32072014)
chr4 (345-394)||(52169937-52169986)
chr4 (220-256)||(34589717-34589753)
chr4 (208-252)||(45615430-45615474)
[»] chr7 (8 HSPs)
chr7 (217-251)||(10893363-10893397)
chr7 (187-252)||(37775963-37776026)
chr7 (345-398)||(1418519-1418572)
chr7 (346-395)||(19624280-19624329)
chr7 (219-264)||(21247739-21247784)
chr7 (219-251)||(3119407-3119439)
chr7 (216-252)||(8204404-8204440)
chr7 (216-252)||(8216881-8216917)
[»] chr3 (2 HSPs)
chr3 (216-252)||(19323463-19323499)
chr3 (214-250)||(21110480-21110516)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 151 - 435
Target Start/End: Complemental strand, 3112470 - 3112186
Alignment:
Q  151 caaactatattaatcactacacctgatacctgatacacactgacattgacaagacgagagacccgtagtaatttgagaaaatgacattattgaatgtaat 250  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3112470 caaactatattaatcactacacctgatacctgctacacactgacattgacaagacgagagacccgtagtaatttgagaaaatgacattattgaatttaat 3112371  T
Q  251 catgtgcgttggtggacatgtgtctggtactggacacacctttgatcagaagtattggtgctgctgaggtcaaaatgtcttttaggatttagtgcttgtt 350  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3112370 catgtgtgttggtggacatgtgtctggtactggacacacctttgatcagaagtattggtgctgctgaggtcaaaatgtcttttaggatttagggcttgtt 3112271  T
Q  351 tggattgacttatgtaagcttatttattgacataagcacttgtgaggcgagcctttttgagagagttcgcgaaagtaacttatga 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3112270 tggattgacttatgtaagcttatttattgacataagcacttgtgaggcgagcctttttgagagagttcttgaaagtaacttatga 3112186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 3112617 - 3112532
Alignment:
Q  4 aacagttcatgcgtagaactcgcctcgttcttaaggaatctgtcagtcccttatctcttctcttaccttaaatttgttccttttct 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112617 aacagttcatgcgtagaactcgcctcgttcttaaggaatctgtcagtcccttatctcttctcttaccttaaatttgttccttttct 3112532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 4560652 - 4560603
Alignment:
Q  348 gtttggattgacttatgtaagcttatttattgacataagcacttgtgagg 397  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgagg 4560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 14926890 - 14926950
Alignment:
Q  336 gatttagtgcttgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||| |||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  14926890 gatttagggcttgtttggattgacttatttgaacttatttactggcataagcacttgtgag 14926950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 26479936 - 26479888
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtga 395  Q
    ||||||||||||||||| ||||||||| |||||||| ||| ||||||||    
T  26479936 tgtttggattgacttatttaagcttatctattgacacaaggacttgtga 26479888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 29198533 - 29198487
Alignment:
Q  213 ccgtagtaatttgagaaaatgacattattgaatgtaatcatgtgcgt 259  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  29198533 ccgtaataatttgagaaaatgacataattcaatgtaatcatatgcgt 29198487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 41475031 - 41475077
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgt 393  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||||    
T  41475031 tgtttggattgacttatttgagcttattgattgacataagtacttgt 41475077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 32691750 - 32691787
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatca 32691787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 33714177 - 33714140
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  33714177 gtagtaatttgagaagatgacattatcgaatgtaatca 33714140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 3092543 - 3092591
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtga 395  Q
    ||||||||||||||||| | |||||||||||||||  || |||||||||    
T  3092543 tgtttggattgacttatttgagcttatttattgacgcaaacacttgtga 3092591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 8060827 - 8060775
Alignment:
Q  339 ttagtgcttgtttggattgacttatgtaagcttatttattgacataagcactt 391  Q
    |||||| |||||||||||||||||| | ||| ||| ||||||||||| |||||    
T  8060827 ttagtgtttgtttggattgacttatttgagcatatctattgacataaacactt 8060775  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 11059648 - 11059692
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcactt 391  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||    
T  11059648 tgtttgaattgacttatgtgagcttatctaatgacataagcactt 11059692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 18331868 - 18331816
Alignment:
Q  344 gcttgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    |||||||||||||||||||| | | ||||| || | |||||||||||||||||    
T  18331868 gcttgtttggattgacttatttgatcttatctactaacataagcacttgtgag 18331816  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 7512206 - 7512243
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7512206 gtagtaatttgagaaaatgacattattgaatgtaatca 7512243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 7512450 - 7512487
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7512450 gtagtaatttgagaaaatgacattattgaatgtaatca 7512487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 7512126 - 7512164
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatcat 253  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  7512126 gtagtaatttgagaaaatgacagtattgaatgtaatcat 7512164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 36796623 - 36796675
Alignment:
Q  344 gcttgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    |||||||||||||||||||| | ||||||| || |||||||| ||||||||||    
T  36796623 gcttgtttggattgacttatttgagcttatctaatgacataaacacttgtgag 36796675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 7512285 - 7512322
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  7512285 gtagtaatttgagaaaatgacattactgaatgcaatca 7512322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 43208325 - 43208288
Alignment:
Q  216 tagtaatttgagaaaatgacattattgaatgtaatcat 253  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  43208325 tagtaatttgagaaaatgacataattcaatgtaatcat 43208288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 2039897 - 2039861
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatcatgt 255  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  2039897 taatttgagaaaatgacatgattcaatgtaatcatgt 2039861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 5377114 - 5377162
Alignment:
Q  345 cttgtttggattgacttatgtaagcttatttattgacataagcacttgt 393  Q
    |||||| |||||| ||||| | ||||||| |||||||||||||||||||    
T  5377114 cttgttcggattggcttatttgagcttatctattgacataagcacttgt 5377162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 17368823 - 17368775
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtga 395  Q
    ||||||||||||||||| ||| ||||| || || |||||||||||||||    
T  17368823 tgtttggattgacttatttaaacttatctactggcataagcacttgtga 17368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 10335428 - 10335391
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10335428 gtagtaatttgagaaaatgacataattgaatgtaatca 10335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 8010508 - 8010459
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||||||||||| ||||||| ||||| ||||| || |||||||    
T  8010508 tgtttggattgacttatgtgagcttatctattggcataaacatttgtgag 8010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 10522995 - 10522954
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatcatgtg 256  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  10522995 gtagtaatttaagaaaatgacataattgaatataatcatgtg 10522954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 8148131 - 8148163
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatc 251  Q
    ||||||||||||||||||| |||||||||||||    
T  8148131 taatttgagaaaatgacataattgaatgtaatc 8148163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 40759311 - 40759262
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||| ||||| | ||||||| ||||||||||||||||||||||    
T  40759311 tgtttggattgccttatttgagcttatctattgacataagcacttgtgag 40759262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 1830190 - 1830143
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtg 394  Q
    ||||||||||||||||| | || ||||||| |||||||||||||||||    
T  1830190 tgtttggattgacttatttgagtttatttactgacataagcacttgtg 1830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 8017585 - 8017538
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtg 394  Q
    ||||||||||||||||| | || |||| ||||||||||||||||||||    
T  8017585 tgtttggattgacttatttgaggttatctattgacataagcacttgtg 8017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 9530646 - 9530691
Alignment:
Q  351 tggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||||| | |||||||| |||||||||||||| ||||||    
T  9530646 tggattgacttatttgagcttattcattgacataagcacgtgtgag 9530691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 22878249 - 22878200
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||||||||| | |||||||  | |||||||||||||||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgag 22878200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 26787786 - 26787753
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||| ||||||||||||||||||||||||||    
T  26787786 taatttgcgaaaatgacattattgaatgtaatca 26787753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 30331912 - 30331863
Alignment:
Q  337 atttagtgcttgtttggattgacttatgtaagcttatttattgacataag 386  Q
    |||||| |||||||||||||||||||| | ||||||| || |||||||||    
T  30331912 atttagggcttgtttggattgacttatttcagcttatctactgacataag 30331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 32843720 - 32843757
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  32843720 gtagtaatatgagaaaatgacataattgaatgtaatca 32843757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 22131305 - 22131269
Alignment:
Q  216 tagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||||||| || ||||||||||    
T  22131305 tagtaatttgagaaaatgacattgttcaatgtaatca 22131269  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 33976329 - 33976280
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||||||||| | |||||||||| |||||| ||||||||||||    
T  33976329 tgtttggattgacttatttgagcttatttaatgacatcagcacttgtgag 33976280  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 6292644 - 6292594
Alignment:
Q  346 ttgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    |||||||||||||||||| | ||||||| || |||||||||||||| ||||    
T  6292644 ttgtttggattgacttatttgagcttatctactgacataagcacttttgag 6292594  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 6074610 - 6074565
Alignment:
Q  351 tggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    ||||||||||||| || ||||||| |||| ||||||||||||||||    
T  6074610 tggattgacttatttacgcttattcattggcataagcacttgtgag 6074565  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 2976705 - 2976740
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatcatg 254  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2976705 taatttgagaaaatgacataattgaatgtaatcatg 2976740  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 51414302 - 51414251
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgaggc 398  Q
    ||||| |||| || ||| ||||||||||||||||||||| ||||||||||||    
T  51414302 tgttttgattaacatatttaagcttatttattgacataatcacttgtgaggc 51414251  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 683059 - 683096
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  683059 gtaggaatttgagaaaatgacataattgaatgtaatca 683096  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 8457936 - 8457969
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||| ||||||||||||||    
T  8457936 taatttgagaaaatgacataattgaatgtaatca 8457969  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 9988751 - 9988714
Alignment:
Q  215 gtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  9988751 gtagttatttgagaaaatgacataattgaatgtaatca 9988714  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 32072014 - 32071965
Alignment:
Q  347 tgtttggattgacttatgtaagcttatttattgacataagcacttgtgag 396  Q
    |||||||| |||||||| | || |||| ||||||||||||||||||||||    
T  32072014 tgtttggactgacttatttgagtttatctattgacataagcacttgtgag 32071965  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 52169937 - 52169986
Alignment:
Q  345 cttgtttggattgacttatgtaagcttatttattgacataagcacttgtg 394  Q
    ||||||||||||||||||| | || |||| |||| |||||||||||||||    
T  52169937 cttgtttggattgacttatttgagtttatctatttacataagcacttgtg 52169986  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 34589753 - 34589717
Alignment:
Q  220 aatttgagaaaatgacattattgaatgtaatcatgtg 256  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  34589753 aatttgagaaaatgacataattcaatgtaatcatgtg 34589717  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 45615474 - 45615430
Alignment:
Q  208 gagacccgtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    |||||| |||||||||| |||||||||||| |||||| |||||||    
T  45615474 gagaccggtagtaatttaagaaaatgacataattgaacgtaatca 45615430  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 10893397 - 10893363
Alignment:
Q  217 agtaatttgagaaaatgacattattgaatgtaatc 251  Q
    ||||||||||||||||||||| |||||||||||||    
T  10893397 agtaatttgagaaaatgacataattgaatgtaatc 10893363  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 37775963 - 37776026
Alignment:
Q  187 acactgacattgacaagacgagagacccgtagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||  ||| |  || ||||||||||||||||||||||| ||| ||||||||||    
T  37775963 acactgacattgacaaatcgaca--ccagtagtaatttgagaaaatgacataattaaatgtaatca 37776026  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 1418572 - 1418519
Alignment:
Q  345 cttgtttggattgacttatgtaagcttatttattgacataagcacttgtgaggc 398  Q
    ||||||||||||||||||| | ||||||| || || ||||||||||| ||||||    
T  1418572 cttgtttggattgacttatttgagcttatctactggcataagcacttatgaggc 1418519  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 19624329 - 19624280
Alignment:
Q  346 ttgtttggattgacttatgtaagcttatttattgacataagcacttgtga 395  Q
    |||||||| ||||||||| | || |||| |||||||||||||||||||||    
T  19624329 ttgtttggcttgacttatttgagtttatctattgacataagcacttgtga 19624280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 21247784 - 21247739
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatcatgtgcgttggtg 264  Q
    ||||||||||||||||| | ||| |||||||||||||| |||||||    
T  21247784 taatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtg 21247739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 3119407 - 3119439
Alignment:
Q  219 taatttgagaaaatgacattattgaatgtaatc 251  Q
    ||||||||||||||||||| |||||||||||||    
T  3119407 taatttgagaaaatgacataattgaatgtaatc 3119439  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 8204440 - 8204404
Alignment:
Q  216 tagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||| || ||||||||||||||    
T  8204440 tagtaatttgagaaaatgatataattgaatgtaatca 8204404  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 8216917 - 8216881
Alignment:
Q  216 tagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    ||||||||||||||||||| || ||||||||||||||    
T  8216917 tagtaatttgagaaaatgatataattgaatgtaatca 8216881  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 19323499 - 19323463
Alignment:
Q  216 tagtaatttgagaaaatgacattattgaatgtaatca 252  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  19323499 tagtaatttgagaaaatgacataattgaatttaatca 19323463  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 21110516 - 21110480
Alignment:
Q  214 cgtagtaatttgagaaaatgacattattgaatgtaat 250  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  21110516 cgtaataatttgagaaaatgacataattgaatgtaat 21110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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