View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841-Insertion-15 (Length: 403)

Name: NF4841-Insertion-15
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841-Insertion-15
NF4841-Insertion-15
[»] chr3 (12 HSPs)
chr3 (10-145)||(6798932-6799067)
chr3 (239-353)||(6799346-6799460)
chr3 (264-353)||(6797489-6797576)
chr3 (242-353)||(6531337-6531448)
chr3 (234-315)||(6941084-6941165)
chr3 (26-74)||(8573237-8573285)
chr3 (151-197)||(6798946-6798992)
chr3 (234-315)||(6944304-6944385)
chr3 (26-87)||(6859782-6859843)
chr3 (192-244)||(6799042-6799093)
chr3 (153-197)||(8573237-8573281)
chr3 (26-69)||(6934162-6934205)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 6798932 - 6799067
Alignment:
Q  10 aaaaagggacacaatgcatagaagtatttctgaacaaggatgtcttgtgaagacaatgatgttttttaggacttgagaacacaaactcctttccaaattg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||    
T  6798932 aaaaagggacacaatgcatagaagtatttctgaacaaggatgtcttctgaagacaatgatgttttttaggacttgagaacacatattccttgccaaattg 6799031  T
Q  110 tgttaagacaatgatgcatacaagtatttgtgctaa 145  Q
    ||||| |||||||||||||| |||||||||||||||    
T  6799032 tgttaggacaatgatgcatagaagtatttgtgctaa 6799067  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 6799346 - 6799460
Alignment:
Q  239 atattcccttatttttgtacgtgtttctcttcccctattttgatcattgaaatatctatggattgtgttctatatgtctgtccatatctgatgtaacttt 338  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6799346 atattccgttatttttgtatgtgtttctcttcccatattttgatcattaaaatatctatggattgtgttctatatgtctgtccaaatctgatgtaacttt 6799445  T
Q  339 agaaatcagaaacca 353  Q
    |||||| ||||||||    
T  6799446 agaaattagaaacca 6799460  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 6797489 - 6797576
Alignment:
Q  264 tctcttcccctattttgatcattgaaatatctatggattgtgttctatatgtctgtccatatctgatgtaactttagaaatcagaaacca 353  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||||    
T  6797489 tctcttcccatcttttgatcattggaatatctatggattgtgttctatatg--tgtacatatctgatgtaactttagaaattggaaacca 6797576  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 6531337 - 6531448
Alignment:
Q  242 ttcccttatttttgtacgtgtttctcttcccctattttgatcattgaaatatctatggattgtgttctatatgtctgtccatatctgatgtaactttaga 341  Q
    |||||||||||||||| |||||| |||||||   |||| ||||||  ||||| ||||||||||||||||| ||| ||||||||||| |  | ||||||||    
T  6531337 ttcccttatttttgtatgtgtttttcttcccaccttttaatcattacaatatatatggattgtgttctatgtgtgtgtccatatctaaaattactttaga 6531436  T
Q  342 aatcagaaacca 353  Q
    ||| ||||||||    
T  6531437 aattagaaacca 6531448  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 6941165 - 6941084
Alignment:
Q  234 tcaatatattcccttatttttgtacgtgtttctcttcccctattttgatcattgaaatatctatggattgtgttctatatgt 315  Q
    ||||||| |||||||||||||||| |||||| |||||||   |||| ||||||  |||||||||||| ||||||||||||||    
T  6941165 tcaatatcttcccttatttttgtatgtgtttttcttcccaccttttaatcattagaatatctatggactgtgttctatatgt 6941084  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 8573237 - 8573285
Alignment:
Q  26 catagaagtatttctgaacaaggatgtcttgtgaagacaatgatgtttt 74  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  8573237 catagaagtatttctgaacaaggatgtcgtctgaagacaatgatgtttt 8573285  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 6798946 - 6798992
Alignment:
Q  151 tgcatagaagtatttctgaacaaggatgccttctgaagacgatgatg 197  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  6798946 tgcatagaagtatttctgaacaaggatgtcttctgaagacaatgatg 6798992  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 6944385 - 6944304
Alignment:
Q  234 tcaatatattcccttatttttgtacgtgtttctcttcccctattttgatcattgaaatatctatggattgtgttctatatgt 315  Q
    ||||||| |||||||||||||||| |||||| |||||||   |||| ||||||  ||||||| |||| ||||||||||||||    
T  6944385 tcaatatcttcccttatttttgtatgtgtttttcttcccaccttttaatcattagaatatctctggactgtgttctatatgt 6944304  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6859782 - 6859843
Alignment:
Q  26 catagaagtatttctgaacaaggatgtcttgtgaagacaatgatgttttttaggacttgaga 87  Q
    ||||||||||||| |||||||||||||| | ||||||||||||| ||||  |||| ||||||    
T  6859782 catagaagtatttttgaacaaggatgtcgtctgaagacaatgatattttcgaggaattgaga 6859843  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 6799042 - 6799093
Alignment:
Q  192 atgatgcatagaagtatttgtgctaaattggagtgttgtgattcaatatattc 244  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  6799042 atgatgcatagaagtatttgtgct-aattggaatgtggtgattcaatttattc 6799093  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 8573237 - 8573281
Alignment:
Q  153 catagaagtatttctgaacaaggatgccttctgaagacgatgatg 197  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  8573237 catagaagtatttctgaacaaggatgtcgtctgaagacaatgatg 8573281  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 6934205 - 6934162
Alignment:
Q  26 catagaagtatttctgaacaaggatgtcttgtgaagacaatgat 69  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||    
T  6934205 catagaagtatttcttaacaaggatgtcttctgaaaacaatgat 6934162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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