View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841-Insertion-16 (Length: 398)

Name: NF4841-Insertion-16
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841-Insertion-16
NF4841-Insertion-16
[»] chr3 (9 HSPs)
chr3 (32-397)||(10504410-10504753)
chr3 (56-100)||(13845419-13845463)
chr3 (288-355)||(9842177-9842244)
chr3 (288-355)||(9853196-9853263)
chr3 (122-193)||(10430286-10430357)
chr3 (94-193)||(13845615-13845714)
chr3 (122-206)||(10360243-10360328)
chr3 (68-97)||(10532530-10532559)
chr3 (136-193)||(11778715-11778772)
[»] chr8 (1 HSPs)
chr8 (79-180)||(11488780-11488881)
[»] chr2 (1 HSPs)
chr2 (122-284)||(26910473-26910637)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 32 - 397
Target Start/End: Complemental strand, 10504753 - 10504410
Alignment:
Q  32 gctcatgcagattgtatattaggtaagtaaatccaatctaaaacaagtttacaagaagaatcatgacaaaaataacatgacccacatatgtcttcaatgc 131  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||||| |||||| ||| |    
T  10504753 gctcatgcagactgcatattagctaagtaaatccaatctaaaacaagtttacaagaagaatcatgaca----------gacccacatttgtcttgaattc 10504664  T
Q  132 atccagtgagctgattttcatccacatagaccttaatctcctgtaaagatcaaataagcattattctttcattagttctgaagaccttactgtaattttt 231  Q
    |||||| || ||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  10504663 atccagcgacctgattttcatccacttaggccttgatctcctgtaaagatcaaataagcatttttctttcattagctctgaagacctta-tgtaattttt 10504565  T
Q  232 attgctgtataaaatgttattcaaacaattcaattcagattccagtttccaaaaccaaattaattctacttttattcacaagcacatttcatagcaaaac 331  Q
    ||||||||| ||||||||  | ||| ||||| | |||||||||||||| |||         || |||| |||||||| ||||||||||||||| ||||||    
T  10504564 attgctgtacaaaatgttcgtaaaataattccactcagattccagtttacaa---------aaatctagttttattctcaagcacatttcataacaaaac 10504474  T
Q  332 ataatgagttattacagctgaatttctcagttgtatactatcccattgatgacagtaaaatattga 397  Q
    ||||||||||||| |||||||||||||||||||  |||||||||| | ||||||||||||||||||    
T  10504473 ataatgagttattccagctgaatttctcagttg--tactatcccaattatgacagtaaaatattga 10504410  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 13845419 - 13845463
Alignment:
Q  56 aagtaaatccaatctaaaacaagtttacaagaagaatcatgacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13845419 aagtaaatccaatctaaaacaagtttacaagaagaatcatgacaa 13845463  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 9842244 - 9842177
Alignment:
Q  288 aaattaattctacttttattcacaagcacatttcatagcaaaacataatgagttattacagctgaatt 355  Q
    |||||||||||| ||||||||||||||||||| |||||| |||  || ||||||||| ||||||||||    
T  9842244 aaattaattctagttttattcacaagcacattacatagctaaatgtattgagttattccagctgaatt 9842177  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 9853263 - 9853196
Alignment:
Q  288 aaattaattctacttttattcacaagcacatttcatagcaaaacataatgagttattacagctgaatt 355  Q
    |||||||||||| ||||||||||||||||||| |||||| |||  || ||||||||| ||||||||||    
T  9853263 aaattaattctagttttattcacaagcacattacatagctaaatgtattgagttattccagctgaatt 9853196  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 10430286 - 10430357
Alignment:
Q  122 tcttcaatgcatccagtgagctgattttcatccacatagaccttaatctcctgtaaagatcaaataagcatt 193  Q
    |||||||| |||| |||| |||||||||||||| | |||  ||| |||||||| ||||||||||||||||||    
T  10430286 tcttcaattcatcgagtgggctgattttcatccgcttagggcttgatctcctgaaaagatcaaataagcatt 10430357  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 13845615 - 13845714
Alignment:
Q  94 atgacaaaaataacatgacccacatatgtcttcaatgcatccagtgagctgattttcatccacatagaccttaatctcctgtaaagatcaaataagcatt 193  Q
    ||||||| ||||||||  ||||| | |||||||||| || | || | |||||||||||||||| ||| |||| |||||||| ||| |||||| |||||||    
T  13845615 atgacaagaataacattccccacttttgtcttcaattcaacaagcgggctgattttcatccacttaggccttgatctcctggaaatatcaaaaaagcatt 13845714  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 10360243 - 10360328
Alignment:
Q  122 tcttcaatgcatccagtgagctgattttcatccacatagacc-ttaatctcctgtaaagatcaaataagcattattctttcattag 206  Q
    |||||||| |||| ||||||| |||| |||||||||||| || || |||||||| |||| | ||||||||||| | |||| |||||    
T  10360243 tcttcaattcatcaagtgagcagattatcatccacataggcctttgatctcctgaaaagttgaaataagcattttcctttgattag 10360328  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 10532559 - 10532530
Alignment:
Q  68 tctaaaacaagtttacaagaagaatcatga 97  Q
    ||||||||||||||||||||||||||||||    
T  10532559 tctaaaacaagtttacaagaagaatcatga 10532530  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 11778715 - 11778772
Alignment:
Q  136 agtgagctgattttcatccacatagaccttaatctcctgtaaagatcaaataagcatt 193  Q
    ||||| ||||||||||||||||||  | || |||||||| ||| ||||||||||||||    
T  11778715 agtgaactgattttcatccacataagctttgatctcctgaaaatatcaaataagcatt 11778772  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 11488881 - 11488780
Alignment:
Q  79 tttacaagaagaatcatgacaaaaataacatgacccacatatgtcttcaatgcatccagtgagctgattttcatccacatagaccttaatctcctgtaaa 178  Q
    ||||||||||||||||||| ||||||||||||  |||| | |||||||||| |||| | |||||||||||| |||||  ||| |||| |||||||| |||    
T  11488881 tttacaagaagaatcatgataaaaataacatgctccacttttgtcttcaattcatcaaatgagctgattttgatccatttaggccttgatctcctgaaaa 11488782  T
Q  179 ga 180  Q
    ||    
T  11488781 ga 11488780  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 284
Target Start/End: Complemental strand, 26910637 - 26910473
Alignment:
Q  122 tcttcaatgcatccagtgagctgattttcatccacatagaccttaatctcctgtaaagatcaaataagcattattctttcattagttctgaagaccttac 221  Q
    ||||| || |||| |||||||||||||||||| || ||| | || |||||||| |||||||||||||||||| |||||| ||||| ||  ||||| | |     
T  26910637 tcttcgattcatcaagtgagctgattttcatcaacttaggctttgatctcctgaaaagatcaaataagcatttttctttaattagctccaaagacatgat 26910538  T
Q  222 tgt--aatttttattgctgtataaaatgttattcaaacaattcaattcagattccagtttccaaa 284  Q
    |||  ||||||||||| |||| |||| ||| || | ||||||| ||| ||||| |||||| ||||    
T  26910537 tgtcaaatttttattgttgtagaaaaagttctttagacaattccatttagatttcagtttacaaa 26910473  T

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